Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H04
         (859 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011136-1|AAR82803.1|  806|Drosophila melanogaster GM09007p pro...    29   6.2  
AY118896-1|AAM50756.1| 1689|Drosophila melanogaster LD05834p pro...    29   6.2  
AF041382-1|AAB96783.1| 1690|Drosophila melanogaster microtubule ...    29   6.2  
AE014134-2833|AAF53605.2| 1689|Drosophila melanogaster CG5020-PB...    29   6.2  
AE014134-2832|AAF53604.1| 1690|Drosophila melanogaster CG5020-PA...    29   6.2  

>BT011136-1|AAR82803.1|  806|Drosophila melanogaster GM09007p
           protein.
          Length = 806

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 350 PYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGV 249
           P    P P    S  PGP     PTP T SGTG+
Sbjct: 18  PVTADPEPGATASKLPGPIRSNIPTPAT-SGTGI 50


>AY118896-1|AAM50756.1| 1689|Drosophila melanogaster LD05834p
           protein.
          Length = 1689

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 350 PYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGV 249
           P    P P    S  PGP     PTP T SGTG+
Sbjct: 18  PVTADPEPGATASKLPGPIRSNIPTPAT-SGTGI 50


>AF041382-1|AAB96783.1| 1690|Drosophila melanogaster microtubule
           binding protein D-CLIP-190 protein.
          Length = 1690

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 350 PYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGV 249
           P    P P    S  PGP     PTP T SGTG+
Sbjct: 18  PVTADPEPGATASKLPGPIRSNIPTPAT-SGTGI 50


>AE014134-2833|AAF53605.2| 1689|Drosophila melanogaster CG5020-PB,
           isoform B protein.
          Length = 1689

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 350 PYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGV 249
           P    P P    S  PGP     PTP T SGTG+
Sbjct: 18  PVTADPEPGATASKLPGPIRSNIPTPAT-SGTGI 50


>AE014134-2832|AAF53604.1| 1690|Drosophila melanogaster CG5020-PA,
           isoform A protein.
          Length = 1690

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 350 PYNGAPRPCLFHSARPGPAEGGRPTPPTSSGTGV 249
           P    P P    S  PGP     PTP T SGTG+
Sbjct: 18  PVTADPEPGATASKLPGPIRSNIPTPAT-SGTGI 50


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,298,461
Number of Sequences: 53049
Number of extensions: 688074
Number of successful extensions: 2282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2278
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)