Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H03
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   6.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   6.0  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.9  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    26   7.9  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 401 PPKYPIRTLSFSRSTEPMKN 460
           PPK P+R +S  RS+ P++N
Sbjct: 306 PPKPPLRKVSTQRSSSPIEN 325


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 49  CGHQKLVAREYIINKE 96
           C H  LV REY+++KE
Sbjct: 599 CNHPDLVTREYLLHKE 614


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 362 PISFQSTRKTCTWPPKYPIRTLSFSRSTEPMKN 460
           P+  Q   +   +PP YPI  +S+   T P  N
Sbjct: 736 PVVSQQQPQPYAFPPMYPIPYVSYGYGTMPYNN 768


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/60 (21%), Positives = 25/60 (41%)
 Frame = +1

Query: 364 DFVPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPDAPFRYEAVIVIHKDLPIDNLDQLKGL 543
           D  P+D +    +  + N   V+     TDE    P   E  + +   + +D+ D + G+
Sbjct: 100 DLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLLEEGEVAVSSPILLDSKDVIMGV 159


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 369 EIGLPLLNVIQTLHSISGGNAV*CDPWIWSEYPPCPDTLSGVVMARIF 226
           E+G+P+L +   +  I+  N    +P I  EY P   ++   +   +F
Sbjct: 87  ELGVPVLGICYGMQEIAWLNGRCVEPGIEREYGPATVSMEPEIKTEVF 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,217
Number of Sequences: 5004
Number of extensions: 71228
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)