Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H03
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1674 + 39072861-39073260,39073288-39073358,39073659-390737...    31   1.6  
12_01_0779 + 7129879-7130398,7130585-7130664                           30   2.1  
11_03_0097 + 9967351-9967969,9968180-9968259                           30   2.1  
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989...    29   6.3  
12_01_0062 + 530180-532398,533123-533213,533398-533613                 28   8.3  
11_01_0060 + 453615-454030,454086-455862                               28   8.3  
03_05_0605 - 26066394-26066776,26067466-26067497,26069075-260693...    28   8.3  

>01_06_1674 +
           39072861-39073260,39073288-39073358,39073659-39073716,
           39074604-39074659,39075179-39075400
          Length = 268

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 ISSDHLTELVGCLDNGFKIFHFDNPDLC 196
           ++ + L EL GCLD GF   + + P+LC
Sbjct: 63  LTEEDLEELKGCLDLGFGFAYHEIPELC 90


>12_01_0779 + 7129879-7130398,7130585-7130664
          Length = 199

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 ISSDHLTELVGCLDNGFKIFHFDNPDLC 196
           ++ D L EL GC+D GF   + + P+LC
Sbjct: 99  LTDDDLEELKGCVDLGFGFSYDEIPELC 126


>11_03_0097 + 9967351-9967969,9968180-9968259
          Length = 232

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 ISSDHLTELVGCLDNGFKIFHFDNPDLC 196
           ++ D L EL GC+D GF   + + P+LC
Sbjct: 131 LTDDDLEELKGCVDLGFGFSYDEIPELC 158


>04_04_1062 -
           30498158-30498271,30498358-30498518,30498606-30498924,
           30499412-30499477,30499601-30499726,30499821-30499961,
           30500482-30500535,30501508-30501636,30501733-30501870,
           30501993-30502061,30502135-30502203,30502468-30502623,
           30503795-30503895,30503986-30504136,30504475-30504520,
           30504539-30504637,30504796-30504928,30505018-30505195,
           30505282-30505524,30505612-30505680,30505986-30506085,
           30506898-30507007
          Length = 923

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 104 VPFISSDHLTELVGCLDNGFKIFHFDNPDLCMCERSE 214
           VPF+ S    E +  LD   KIF F+  + C+ ER++
Sbjct: 175 VPFVRSSLNHEDIFILDTANKIFQFNGSNSCIQERAK 211


>12_01_0062 + 530180-532398,533123-533213,533398-533613
          Length = 841

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 FILITLICACVNAAKITYKICVPSQHLK 254
           FIL T++ AC NAA I +  C+ S  LK
Sbjct: 500 FILATVLNACANAALIRHCRCIHSLVLK 527


>11_01_0060 + 453615-454030,454086-455862
          Length = 730

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 171 FILITLICACVNAAKITYKICVPSQHLK 254
           FIL T++ AC NAA I +  C+ S  LK
Sbjct: 484 FILATVLNACANAALIRHCRCIHSLVLK 511


>03_05_0605 -
           26066394-26066776,26067466-26067497,26069075-26069300,
           26069422-26069613,26070069-26070828,26071044-26071583
          Length = 710

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +1

Query: 331 ECLNYVQQRQADFVPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPDA----PFRYEAVIVI 498
           E LN   QR A+    + ++ Y+  ++P+  +   +E+R  +EP +    P   + V  I
Sbjct: 209 ELLNQCIQRVANS---NLDNRYLEKRLPDDLYAKLKEFRVPDEPHSGILDPEHEKRVRNI 265

Query: 499 HKDLPIDNLD 528
           HK L  D++D
Sbjct: 266 HKALDSDDVD 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,878,214
Number of Sequences: 37544
Number of extensions: 467307
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)