Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H03
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           52   8e-07
SB_41446| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_42433| Best HMM Match : zf-CW (HMM E-Value=2.4)                     29   6.4  
SB_33226| Best HMM Match : ubiquitin (HMM E-Value=5.6)                 28   8.5  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 31/114 (27%), Positives = 56/114 (49%)
 Frame = +1

Query: 286 NPRVTLDCIPARDRMECLNYVQQRQADFVPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPD 465
           N  V L C+      +C++ +Q+ +AD V +  ED+Y+A        VV ++Y +    D
Sbjct: 54  NETVNLTCVRGDGVTDCMSRIQRDEADLVTLGEEDIYIAGAKYGLRPVVAEDYGS---KD 110

Query: 466 APFRYEAVIVIHKDLPIDNLDQLKGLKSCHTGVNRNVGYKIPLTMLMXRAVFPK 627
               Y AV ++     + N+  LKG  +CH      +G+KIP+  L+ + +  +
Sbjct: 111 KHIHY-AVALVRSTTTV-NITTLKGAITCHPRAEDMIGWKIPVGFLIWKKLMQR 162


>SB_41446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +1

Query: 238 HHNT*KRVRTWWIFRPNPRVTLDCIPARDRMECLNYVQQRQADFVPVDPEDMYVA 402
           HHNT +  R W+I +    VTLD + + D +E L +++    D +PV  E++ +A
Sbjct: 159 HHNTKQSARKWYIDKLTGGVTLDLMDSIDILEIL-FLKDAIVD-LPVALENIIIA 211


>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 356 GKPISFQSTRKTC-TWPPKYPIRTLSFSRSTEPMKNRMRLSVT 481
           GK  S  S R T  T  P+Y +++LS  R+T P+ N +  +VT
Sbjct: 262 GKSSSVPSKRNTASTHLPEYELKSLSKLRNTNPIHNWINSTVT 304


>SB_42433| Best HMM Match : zf-CW (HMM E-Value=2.4)
          Length = 252

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 268 WWIFRPNPRVTLDCIPARDRMECLNYVQQRQADFVPVDPEDMYVAAKIPNQDFVVFQEY 444
           W  ++P       C PA DR EC    + R  D    + +D+YV + I  + +VVF  Y
Sbjct: 81  WLSWQPMAIRCRICWPAMDREECRRNEKYRNCD----EFKDIYVDSCIEVKKWVVFVNY 135


>SB_33226| Best HMM Match : ubiquitin (HMM E-Value=5.6)
          Length = 211

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 454 EEPDAPFRYEAVIVIHKDLPIDNLDQLKGLKSCHTGVNRNVGYKIPLTMLMXR 612
           E+P+ PFRY    ++HK + +    +L      H  + +  G+  P+  L  R
Sbjct: 113 EDPEEPFRYVFDWIVHKGMSVRECKEL-----LHPELQQRYGFNCPVDHLRLR 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,554,079
Number of Sequences: 59808
Number of extensions: 569895
Number of successful extensions: 1082
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)