Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H03
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    30   2.4  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    30   2.4  

>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
            protein F14D2.6 protein.
          Length = 998

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 487  VIVIHKDLPIDNLDQLKGLKSCHTGVNRNVGY-KIPLTMLMXRAVFPKMNDHSISPKENE 663
            ++V+     ++NLD L+ L+   +  N      ++    L+    FPK+     SPK N 
Sbjct: 843  LLVVKSTAKLENLDFLENLEQIVSLENSTSPIIQLSSNKLLQNVNFPKIKTPLFSPKNNH 902

Query: 664  LXALVDVLHEILH 702
               +VD   EI++
Sbjct: 903  YIEIVDNKQEIIY 915


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -2

Query: 415 WVFWRP-----RTCLPGRLERNRLASAERNSDTPFYLWRECSLV*P 293
           W  W P      TC  G ++RNR+    RN D P      C  + P
Sbjct: 351 WTLWSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLP 396


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
 Frame = -2

Query: 415 WVFWRP-----RTCLPGRLERNRLASAERNSDTPFYLWRECSLV*P 293
           W  W P      TC  G ++RNR+    RN D P      C  + P
Sbjct: 351 WTLWSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLP 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,843,982
Number of Sequences: 27780
Number of extensions: 413613
Number of successful extensions: 952
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)