BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP03_F_H02 (831 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0879 + 20508414-20510051 29 4.5 12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 28 7.9 06_01_0149 + 1124427-1126805 28 7.9 >04_03_0879 + 20508414-20510051 Length = 545 Score = 29.1 bits (62), Expect = 4.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 455 EPLPGAPYLILAAAKFHCELQL 520 EP PGA +L KFHC+++L Sbjct: 466 EPHPGAWGALLGGCKFHCDIEL 487 >12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322, 1943425-1943568,1944284-1944443,1944512-1944621, 1944900-1945019,1945649-1945766,1946610-1946729, 1947228-1947285,1947590-1947723,1949332-1949414, 1949544-1949786,1949851-1949976,1950075-1951562 Length = 1093 Score = 28.3 bits (60), Expect = 7.9 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +1 Query: 673 YVIENVKKLALSTQIAYSNLARNR-FDKNLGLSFN 774 YV++N K L + +++L NR FD+ L +S N Sbjct: 675 YVLDNCKLSFLLVMLVFASLVGNRYFDRELAMSIN 709 >06_01_0149 + 1124427-1126805 Length = 792 Score = 28.3 bits (60), Expect = 7.9 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -3 Query: 157 PHLVNVLASEPTQRTTKAKIINFCISIVSFELQ*LNDPK 41 PH +A E R T A++ +C +V+F+ + L D K Sbjct: 596 PHPTEHVAEERRSRKTAARLSRYCAYLVAFQPELLPDNK 634 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,986,754 Number of Sequences: 37544 Number of extensions: 357607 Number of successful extensions: 829 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 809 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 829 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2291695380 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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