Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H02
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0879 + 20508414-20510051                                         29   4.5  
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    28   7.9  
06_01_0149 + 1124427-1126805                                           28   7.9  

>04_03_0879 + 20508414-20510051
          Length = 545

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 455 EPLPGAPYLILAAAKFHCELQL 520
           EP PGA   +L   KFHC+++L
Sbjct: 466 EPHPGAWGALLGGCKFHCDIEL 487


>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 673 YVIENVKKLALSTQIAYSNLARNR-FDKNLGLSFN 774
           YV++N K   L   + +++L  NR FD+ L +S N
Sbjct: 675 YVLDNCKLSFLLVMLVFASLVGNRYFDRELAMSIN 709


>06_01_0149 + 1124427-1126805
          Length = 792

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 157 PHLVNVLASEPTQRTTKAKIINFCISIVSFELQ*LNDPK 41
           PH    +A E   R T A++  +C  +V+F+ + L D K
Sbjct: 596 PHPTEHVAEERRSRKTAARLSRYCAYLVAFQPELLPDNK 634


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,986,754
Number of Sequences: 37544
Number of extensions: 357607
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)