Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_H02
         (831 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   3.5  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   4.6  
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_34104| Best HMM Match : SH2 (HMM E-Value=1.6e-24)                   28   8.1  
SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)                       28   8.1  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 183 GFEENLMRNWVCLVEHESSRDTSKTN 260
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 176 ETWLRRKSHEELGMSGRAREQP*HVQDEHEP 268
           E WL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +3

Query: 180 HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVK 359
           H  +   +++W+  +  E  RDT+      N      + ++N+  W  K     K  +VK
Sbjct: 53  HEADPVAVKSWLKKLSEEQFRDTADKYLRPNNCSHVVVPKVNEEIW-GKLTRQVKTKDVK 111

Query: 360 CSDLLTDDITKAAKCAKK 413
            S L T +ITKA   A K
Sbjct: 112 FSRLQT-NITKAGHIAVK 128


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  DFWIIQLL*LERYDRNAEVNYFRFG 112
           D+W++++  L R+ RN   NY+ +G
Sbjct: 715 DWWLLKVTKLPRHQRNEASNYYTYG 739


>SB_34104| Best HMM Match : SH2 (HMM E-Value=1.6e-24)
          Length = 421

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 565 ALSTQVCFEEIESKV*LKFTVEFSSC*YQ-VRSPWQW 458
           +LS Q   E+IES   L    +  SC YQ ++  WQW
Sbjct: 338 SLSGQAILEKIESGYRLPAPAKLPSCVYQLMKDCWQW 374


>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
          Length = 246

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 111 VVLCVGSEAKTFTRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYG 290
           VV   G  + + +   +   L++ GF  +L  + V  +   +S    K    RNG K   
Sbjct: 41  VVKVTGGRSNSSSHEDVAQSLKRSGFLYDLTESSV--IPTATSATYRKFRLKRNGMKKTE 98

Query: 291 LFQINDRYWCS 323
            F+   R WCS
Sbjct: 99  FFKYLRRKWCS 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,270,911
Number of Sequences: 59808
Number of extensions: 428781
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)