Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G24
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.49 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.85 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   2.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.9  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 18/58 (31%), Positives = 18/58 (31%)
 Frame = -3

Query: 825 PGGGGGXXXEXXGGGGXGGGGXXVGGXARGXXXXKXXGXWXFXGGGXXXXGXXGXGXG 652
           PG  GG      G GG  GG    GG   G       G     GG     G  G   G
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 849 GXGXGXAXPGGGGGXXXEXXG-GGGXGGGGXXVGG 748
           G G G A  GG GG      G GG  GG G   GG
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/64 (32%), Positives = 22/64 (34%)
 Frame = -3

Query: 843 GXGXAXPGGGGGXXXEXXGGGGXGGGGXXVGGXARGXXXXKXXGXWXFXGGGXXXXGXXG 664
           G G +  GG GG      G GG GGG     G  RG       G     GG     G  G
Sbjct: 10  GRGGSR-GGRGGF---NGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65

Query: 663 XGXG 652
              G
Sbjct: 66  GAKG 69



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = -3

Query: 843 GXGXAXPGGGGGXXXEXXGGGGXGGGGXXVGGXARGXXXXKXXGXWXFXGG 691
           G      G GGG      GG G   GG    G ARG       G     GG
Sbjct: 20  GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -3

Query: 822 GGGGGXXXEXXGGGGXGGGGXXVGGXARGXXXXKXXGXWXFXGGGXXXXGXXGXGXG 652
           GG GG      G  G  GG     G ARG       G     GG     G    G G
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 24/99 (24%), Positives = 27/99 (27%), Gaps = 2/99 (2%)
 Frame = +3

Query: 564 PPXPPPXPXXVFXPXLXPTGGXPRPXXXXNXHPXXXXXGGXGRPPKKXTXPXFFXFFSPG 743
           PP PPP       P L P G   R        P          P    + P      +P 
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP--PSLPPSAPPSLPMGAPA 445

Query: 744 PXPXQXFXP--PXXPPXLXLLXPXPPHXRXXRPLPLXPP 854
             P     P  P  P  +    P PP      P P   P
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 849 GXGXGXAXPGGGGGXXXEXXGG-GGXGGGGXXVGG 748
           G G     PGG GG      GG GG GGG    GG
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/63 (36%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = -3

Query: 849 GXGXGXAXPGGGGGXXXEXXGG-GGXGGGGXXVGGXARGXXXXKXXGXWXFXGGGXXXXG 673
           G G      GG GG      GG GG GGG    GG   G       G   F GGG    G
Sbjct: 215 GEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG----FGGGPGGF-GGGPGGHG 269

Query: 672 XXG 664
             G
Sbjct: 270 GPG 272



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 25/70 (35%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
 Frame = -3

Query: 837 GXAXPGGGGGXXXEXXGGGGXGG-GGXXVGGXARGXXXXKXXGXWXFXGG-GXXXXGXXG 664
           G    G GGG      G GG GG GG    G   G       G   F GG G    G  G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHG-------GHGGFGGGPGGFEGGPGG 239

Query: 663 XGXGFFFXGG 634
            G G    GG
Sbjct: 240 FGGGPGGFGG 249


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 25/105 (23%), Positives = 28/105 (26%), Gaps = 3/105 (2%)
 Frame = +3

Query: 549  PPXXXPPX---PPPXPXXVFXPXLXPTGGXPRPXXXXNXHPXXXXXGGXGRPPKKXTXPX 719
            PP   P     P P P     P   P+G  P P       P     G    P      P 
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151

Query: 720  FFXFFSPGPXPXQXFXPPXXPPXLXLLXPXPPHXRXXRPLPLXPP 854
                    P P      P  P     + P P       P+P  PP
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP--PP 1194



 Score = 23.0 bits (47), Expect(2) = 3.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 809  PPPPPGXAXPXPXP 850
            P PPP  A P P P
Sbjct: 1209 PVPPPSTAPPVPTP 1222



 Score = 22.2 bits (45), Expect(2) = 3.2
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +2

Query: 635  PPKKKKPXPXPXXPXXXXPPP 697
            PP +  P P P       PPP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPP 1213


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/68 (30%), Positives = 23/68 (33%)
 Frame = -3

Query: 849 GXGXGXAXPGGGGGXXXEXXGGGGXGGGGXXVGGXARGXXXXKXXGXWXFXGGGXXXXGX 670
           G   G A  GG GG        GG GG     GG +RG       G +     G    G 
Sbjct: 129 GARNGPAGRGGRGGFR------GGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGF 182

Query: 669 XGXGXGFF 646
            G   G F
Sbjct: 183 RGGSRGGF 190


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 809 PPPPPGXAXPXPXP 850
           PPPPPG A   P P
Sbjct: 764 PPPPPGVAGAGPPP 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,805
Number of Sequences: 5004
Number of extensions: 26083
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)