Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_G21
(865 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 48 7e-06
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_43565| Best HMM Match : EGF (HMM E-Value=2.8e-05) 32 0.69
SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05) 32 0.69
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.69
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11) 31 1.2
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 31 1.2
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014) 31 1.6
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_6744| Best HMM Match : UPAR_LY6 (HMM E-Value=0.51) 29 3.7
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 4.9
SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 6.5
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 29 6.5
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30) 29 6.5
SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16) 29 6.5
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 48.4 bits (110), Expect = 7e-06
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 403 CCNGYVRNIYNPNICE-PHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGCQNG 579
CC+G+ ++ N C P CSKGC +C P+ CTC P + G C C +G +
Sbjct: 84 CCSGWAQS---GNSCPTPICSKGCAQGVCVKPDNCTCHPGY---DGPSCDQACTLGRWDV 137
Query: 580 HCSGRECVCR 609
+C+ C C+
Sbjct: 138 NCN-NTCECQ 146
Score = 31.5 bits (68), Expect = 0.92
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 632 GRKYCVPACSNNCAGVGNCTSPNRCDCAPG 721
G P CS CA G C P+ C C PG
Sbjct: 92 GNSCPTPICSKGCAQ-GVCVKPDNCTCHPG 120
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 445 CEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGC---QNGHCS 588
C P C++GCVN CT+P++CTC + G+ C + C +GHC+
Sbjct: 232 CVPVCTQGCVNGKCTSPDVCTC-------SFGWTGPNCSVECLCNGHGHCA 275
Score = 37.9 bits (84), Expect = 0.011
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 502 CTCFPDHVKNAGGFCIATCPIGCQNGHCSGRE-CVCR-GW 615
C C P + + G C+ C GC NG C+ + C C GW
Sbjct: 218 CVCKPGYEQALSGQCVPVCTQGCVNGKCTSPDVCTCSFGW 257
Score = 35.1 bits (77), Expect = 0.074
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 644 CVPACSNNCAGVGNCTSPNRCDCAPG 721
CVP C+ C G CTSP+ C C+ G
Sbjct: 232 CVPVCTQGCVN-GKCTSPDVCTCSFG 256
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 647 VPACSNNCAGVGNCTSPN-RCDCAPG 721
+ C NNC+G G+C S + C CAPG
Sbjct: 361 IRVCPNNCSGHGSCNSASGLCTCAPG 386
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 454 HCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGCQNGHC-SGRECVC 606
H + CVN T C C P + + C TC C +G C S C C
Sbjct: 47 HYNSTCVNTYGTYH--CICNPGYTGDGKTACNKTCYPACVHGTCNSNYLCDC 96
>SB_43565| Best HMM Match : EGF (HMM E-Value=2.8e-05)
Length = 192
Score = 31.9 bits (69), Expect = 0.69
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 656 CSNNCAGVGNCTSPNRCDCAPGLSDN 733
C C G C +PN C C PG + N
Sbjct: 152 CDPPCLNGGRCKAPNTCACLPGWTGN 177
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 442 ICEPHCSKGCVNALCTAPEICTCFPDHVKN 531
IC+P C G C AP C C P N
Sbjct: 151 ICDPPCLNG---GRCKAPNTCACLPGWTGN 177
>SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)
Length = 444
Score = 31.9 bits (69), Expect = 0.69
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Frame = +1
Query: 403 CCNGYVRNIYNPNICEPHC----SKGCVNALCTAPEICTCFPDHVKNAG------GFCIA 552
C NGY R + + +C + C+N C C + + G+C
Sbjct: 259 CMNGYCRYVSTYDCMNGYCRYVSTYDCINGYCRYVSTYDCMNGYCRYVSTYDCMNGYCRY 318
Query: 553 TCPIGCQNGHC---SGRECVCR 609
C NG+C S +C CR
Sbjct: 319 VSTYDCMNGYCRYVSTYDCYCR 340
Score = 31.9 bits (69), Expect = 0.69
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Frame = +1
Query: 403 CCNGYVRNIYNPNICEPHC----SKGCVNALCTAPEICTCFPDHVKN---AGGFCIATCP 561
C NGY R + + +C + C+N C C+ +V G+C
Sbjct: 298 CMNGYCRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCYCRYVSTYDCMNGYCRYVST 357
Query: 562 IGCQNGHC 585
C NG+C
Sbjct: 358 YDCMNGYC 365
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Frame = +1
Query: 403 CCNGYVRNIYNPNICEPHC----SKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGC 570
C NGY R + + +C + C+N C C G+C C
Sbjct: 122 CMNGYCRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCM-------NGYCRYVSTYDC 174
Query: 571 QNGHC---SGRECVCR 609
NG+C S +C CR
Sbjct: 175 MNGYCRYVSTYDCYCR 190
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 31.9 bits (69), Expect = 0.69
Identities = 24/65 (36%), Positives = 31/65 (47%)
Frame = +2
Query: 359 LKETDPGPISASFVLAAMAT*GTSTTLTFASRTAAKDASTHCARRPKSARASLTTSRTPA 538
L T P +AS V A T S T T A +A+T P++A ASL T+ A
Sbjct: 251 LATTAPEATTASLVTTAPETTTASLVTTAPEATTAPEATT----APEAATASLVTTAPEA 306
Query: 539 ASASL 553
+ASL
Sbjct: 307 TTASL 311
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 359 LKETDPGPISASFVLAAMAT*GTSTTLTFASRTAAKDASTH--CARRPKSARASLTTSRT 532
L T P +AS A T T + T A +A+T PK+ ASL T+
Sbjct: 600 LVTTAPEATTASLATTASLATTAPETATASLATTAPEATTASLATTAPKTTTASLATTAP 659
Query: 533 PAASASL 553
A +ASL
Sbjct: 660 EATTASL 666
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +2
Query: 359 LKETDPGPISASFVLAAMAT*GTSTTLTFASRTAAKDASTHCARRPKSARASLTTSRTPA 538
L T P +AS + A T S T T A +A+T P++ ASL T+ A
Sbjct: 666 LVTTAPEATTASLLTTAPETTTASLATTAPEATTAPEATT----APEATTASLATTAPEA 721
Query: 539 ASASL 553
+ASL
Sbjct: 722 TTASL 726
>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
Length = 1477
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 644 CVPACSNNCAGVGNCTSPNRCDCAPGLSDN 733
C C NNC+ G C + + C C S N
Sbjct: 1344 CTYTCENNCSNHGQCVARDTCVCDQKFSGN 1373
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +2
Query: 632 GRKYCVPACSNNCAGVGNCTSPNRCDCAPGLSDN 733
G C NNC+ G C + + C C S N
Sbjct: 1372 GNDCSADTCENNCSNHGQCVARDTCVCDQKFSGN 1405
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 638 KYCVPACSNNCAGVGNCTSPNRCDCAPG 721
K C CAG G CT+ +C C PG
Sbjct: 523 KSCPSIGGKECAGHGVCTNEGKCACDPG 550
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +1
Query: 445 CEPHCSKGCVNALCTAPEI-CTCFPDHVKNAGGFCIATCPIGCQNGHCSGRECVCRG 612
C C K C + CTA +C + + C + C G CS + CV G
Sbjct: 332 CTQECGKNCTSMACTAKSCELSCPGGGCIMSCSSSVENCTMSCPGGGCS-QHCVATG 387
>SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014)
Length = 198
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 656 CSNNCAGVGNCTSPNRCDCAPG 721
C N+C+G+GNCT+ C C G
Sbjct: 62 CPNDCSGLGNCTN-RTCICLDG 82
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 656 CSNNCAGVGNCTSPNRCDCAPG 721
C N+C+G+GNCT+ C C G
Sbjct: 380 CPNDCSGLGNCTN-RTCICLDG 400
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 364 GNGSRPDL--SVIRSCCNGYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAG 537
G S+P++ S R C NG P C P C+KGC C+ E + K
Sbjct: 1298 GKSSKPEIMASTKRECPNGC------PTSCYPSCNKGC----CSGSEKSIKQQETSKYGE 1347
Query: 538 GFCIATCPIGCQNGHC 585
CP+ C+ +C
Sbjct: 1348 YVVSIRCPVECRPYNC 1363
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 644 CVPACSNNCAGVGNCTSPNRCDC 712
CVP C N G C+SPN C C
Sbjct: 342 CVPFCQNG----GTCSSPNTCKC 360
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Frame = +1
Query: 403 CCNGYVRNIYNPNICEPHC--SKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGCQN 576
C G+ N +C+P C S C N C + T ++ +++C CQN
Sbjct: 291 CAVGFTGNTCEERLCDPPCQNSGTCNNGTCICTKQYT--GKSCEHGINLVLSSCVPFCQN 348
Query: 577 -GHCSG-RECVC 606
G CS C C
Sbjct: 349 GGTCSSPNTCKC 360
>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 30.3 bits (65), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 656 CSNNCAGVGNCTSPNRCDCAPGLS 727
C N+C+G GNCT+ C C G +
Sbjct: 724 CPNDCSGNGNCTN-RTCTCEEGFT 746
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/63 (33%), Positives = 26/63 (41%)
Frame = +1
Query: 418 VRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGCQNGHCSGRE 597
VRNI C C++ +A C A E C C P + + TC N HC
Sbjct: 772 VRNIIVVKTCND-CNR---HATCVANE-CVCNPGYTGDGHQCQPDTCDSCPPNSHCMRGV 826
Query: 598 CVC 606
CVC
Sbjct: 827 CVC 829
>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 626 DYGRKYCVPACSNNCAGVGNCTSPNRCDCAPGLSDNT 736
+ G C CAG G CT+ +C C G +T
Sbjct: 526 EIGVTNCPLVNGKECAGRGICTNQKKCQCEAGYDPST 562
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 632 GRKYCVPACS--NNCAGVGNCTSPNRCDCAPG 721
G VP C+ + C+ G+C + N C C PG
Sbjct: 70 GISCAVPDCAAVSQCSSHGDCVASNTCRCHPG 101
>SB_6744| Best HMM Match : UPAR_LY6 (HMM E-Value=0.51)
Length = 235
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +3
Query: 561 DWMSKWPLLRSRVRLQGMALN*TTDVNTVCQLAVTTAPVSVIALHQTDATAHLXYQTTHD 740
D M L++ V++QGM+++ + DV CQ A + A +Q +
Sbjct: 30 DTMCSRMLIKGTVKVQGMSMSFSQDVKESCQPAFQCSD----AFNQLMCDSAKSSMNVSS 85
Query: 741 GSCSPQCXDCAPDAC 785
CS QC C D C
Sbjct: 86 VECSRQC--CQDDLC 98
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 650 PACSNNCAGVGNCTSPNRCDCAPG 721
P +C+G G+C + +C C PG
Sbjct: 81 PGYKTDCSGHGSCLADGKCYCDPG 104
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/74 (28%), Positives = 45/74 (60%)
Frame = +2
Query: 386 SASFVLAAMAT*GTSTTLTFASRTAAKDASTHCARRPKSARASLTTSRTPAASASLHARL 565
SAS +A+ A+ +S +++ +S +A AS++ A ++ A+ ++++T +ASAS +
Sbjct: 35 SASSNIASSAS-ASSASMSSSSSLSAS-ASSNIASSDIASSANASSAKTSSASASSNIAS 92
Query: 566 DVKMATAPVESASA 607
++A + SAS+
Sbjct: 93 SASASSASMSSASS 106
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Frame = +1
Query: 445 CEPHCSKGCVNALCT-----------APEICT--CFPDHVKNAGGFCIATCPIGCQNGHC 585
C+P C C + T P +C+ C PD +++CP C HC
Sbjct: 1320 CKPSCPSECCLTVLTPLKENKSHQEGCPAVCSESCKPDCPIKCCSNALSSCPQSCSGDHC 1379
Query: 586 SGREC 600
G EC
Sbjct: 1380 -GAEC 1383
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 662 NNCAGVGNCTSPNRCDCAPG 721
+ C+G G C PN C C G
Sbjct: 2289 HECSGFGTCVGPNVCKCMTG 2308
>SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 546
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 629 YGRKYCVP-ACSNNCAGVGNCTSPNRCDCAPG 721
YG C+ ACSN+ G G C C C PG
Sbjct: 85 YGFPLCIKCACSNS--GFGTCGQYGECICRPG 114
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Frame = +1
Query: 409 NGYVR--NIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGCQNGH 582
N YV+ + + P+ C P C KG V C + C P + GF C G N
Sbjct: 1484 NTYVKCNSTWCPDNCYP-CEKGTV---CFEGKKYDCTPGTYSDGTGFPCKQCDPGSFNNK 1539
Query: 583 CSGRECVC--RGWL*TRLRT 636
C C G+ T ++T
Sbjct: 1540 SKADSCQCCPNGYSSTHMKT 1559
>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
Length = 3015
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 235 YGNNTSHGFLSQNHTVNTMSD 297
YGN +SHGF + + VN SD
Sbjct: 2163 YGNRSSHGFQMKTNVVNDYSD 2183
>SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16)
Length = 299
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -2
Query: 195 ATSVATFDPRLRVLTAGGYQQEPEHIYNQHCSRAVYQVKATSRYKRRHYTQILRIP 28
+TSV +PR + GYQQ+P Y+Q S + A Y Y Q+ P
Sbjct: 155 STSVDYDNPREYTEPSAGYQQQPS-TYDQPSSGYMQPPPAALEYSAPSYNQVQSAP 209
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +2
Query: 641 YCVPACSNNCAGVGNCTSPNRCDCAP---GLSDNTRW 742
Y + C+N C+G G C S C C G+S N W
Sbjct: 138 YSIANCTNGCSGHGACDS-GVCQCQSQWHGVSCNLPW 173
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = +2
Query: 647 VPACSN----NCAGVGNCTSPN-RCDCAPGLS 727
VP C+ +C+G G C S N +C C PG S
Sbjct: 1421 VPGCAGVDGKDCSGHGTCDSANHKCICDPGWS 1452
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,392,937
Number of Sequences: 59808
Number of extensions: 665784
Number of successful extensions: 1916
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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