Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G21
         (865 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             35   0.080
At3g09000.1 68416.m01053 proline-rich family protein                   29   3.0  
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    29   5.3  
At5g17810.1 68418.m02088 homeobox-leucine zipper transcription f...    29   5.3  
At3g56890.1 68416.m06328 F-box family protein-related predicted ...    28   7.0  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    28   7.0  
At2g43590.1 68415.m05417 chitinase, putative similar to basic en...    28   9.2  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 653 ACSNNCAGVGNCTSPNRCDCAPGLSDNTRWIVQSTMSRLRARCLCCSEMCAQXLPKFRCR 832
           +C NNC G G CT+   C C  G +      +  + +    +C     +C   + +FRC 
Sbjct: 633 SCPNNCNGHGKCTTQGVCICENGFTG-----IDCSTAICDEQCSLHGGVCDNGVCEFRCS 687

Query: 833 D 835
           D
Sbjct: 688 D 688


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
 Frame = +2

Query: 446 ASRTAAKDASTHCARRPKSARASLTTSRTPAASASLHARLDVKMATAP-VESASAGDGFK 622
           A+ T      T    RP + RAS + S TP + A+L A        AP   + S+G    
Sbjct: 160 ATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAPRTTTTSSGSARS 219

Query: 623 LDYGRKYCVPACSNNCAGVGNCTSPNRCDCAP 718
               R    P+ +++   V    +P R    P
Sbjct: 220 ATPTRSNPRPSSASSKKPVSRPATPTRRPSTP 251


>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 400 SCCNGYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHV 525
           +CC GY+        C   C +      C A E+C CF + V
Sbjct: 63  TCCGGYMP-------CSGKCGESKCPQFCLATEVCLCFGNSV 97


>At5g17810.1 68418.m02088 homeobox-leucine zipper transcription
           factor family protein similar to to PRESSED FLOWER
           (GP:17907768) {Arabidopsis thaliana};
          Length = 268

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 205 DNTNENIAKFYGNNTSHGFLSQNHTVNTMS 294
           +N  EN+ K YG+ + H    Q+H+ N  S
Sbjct: 159 NNGMENLFKMYGHESDHNHQQQHHSSNAAS 188


>At3g56890.1 68416.m06328 F-box family protein-related predicted
           proteins - Arabidopsis thaliana; contains TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 219

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 707 DCAPGLSDNTRWIVQSTMSRLRARCLCCSEMC 802
           D    LS N     +S++S +++RC CC  +C
Sbjct: 180 DYVEDLSLNDAKQFKSSISHIKSRCYCCETLC 211


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 497 KSARASLTTSRTPAASASLHARLDVKM 577
           KS    LTTS+TP AS S+    DVK+
Sbjct: 758 KSGLRDLTTSKTPEASISVALTRDVKL 784


>At2g43590.1 68415.m05417 chitinase, putative similar to basic
           endochitinase CHB4 precursor SP:Q06209 from [Brassica
           napus]
          Length = 264

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +1

Query: 502 CTCFPDHVKNAGGFC---IATCPIGCQNGHCSG 591
           C C P+   +  G+C    A C +GC++G C G
Sbjct: 27  CGCAPNLCCSQFGYCGTDDAYCGVGCRSGPCRG 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,197,407
Number of Sequences: 28952
Number of extensions: 420705
Number of successful extensions: 1181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)