Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G20
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    64   2e-11
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   5.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   7.8  

>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 32/84 (38%), Positives = 50/84 (59%)
 Frame = +1

Query: 202 PIVLWHGMGDTCCMSFSLGSFKIFLEKNIPGVYVLSLQIGNNTVEDFENGYFMNPNLQVE 381
           P+V+WHG+GDT   SF+L      ++K   G  V ++++G+N  ED + GY      Q++
Sbjct: 27  PVVIWHGLGDTPT-SFTLTEVSQRVQKLTKGA-VYAIRVGDNEFEDIKAGYLGKLEDQLD 84

Query: 382 YVCEKLAADPKLSNGFNVMGFSQG 453
            VC+ +  +  LSNGF  +G SQG
Sbjct: 85  EVCDLIGNEDSLSNGFYALGLSQG 108



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 24/78 (30%), Positives = 36/78 (46%)
 Frame = +3

Query: 543 GIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLAD 722
           GI  IP C          V  +L    ++SW+QN +VQA Y+        Y  N+ FL  
Sbjct: 136 GINTIPGCSPTNLICKAVVHSILGLGIWHSWIQNHVVQAQYYRTEKQYDKYLENNKFLTH 195

Query: 723 INNVRTVNKTYIQNLNNL 776
           +NN   ++  Y +N+  L
Sbjct: 196 LNN-EVLHDNYTRNIEKL 212


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 277 EKNIPGV-YVLSLQIGNNTVEDFENGYFMNPNLQVEYVCEKLAADPKLSNGFNVMGFSQG 453
           EKN+    +V S+  GN T+ED  +     P  Q  Y  +   AD K S   ++  F   
Sbjct: 402 EKNVDNQEFVTSISNGNQTLEDTSHSPQTQPPFQPPYPSK---ADEKNSYHSDLYNFGSS 458

Query: 454 MSV 462
           ++V
Sbjct: 459 LTV 461


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 482 RCGHKLPQIKNMVSLGGQHQGHLWHTSLWC 571
           RCG    + +  +S GG    H+WH   +C
Sbjct: 21  RCGQAFQRRETPISFGG----HMWHKDCFC 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,402,002
Number of Sequences: 5004
Number of extensions: 69280
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)