Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G20
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...    30   2.0  
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    29   3.5  
02_03_0192 - 16204575-16204582,16204798-16204966,16205708-162057...    29   3.5  
10_08_0939 + 21696941-21697049,21697171-21697255,21698385-216984...    29   4.7  
04_04_0920 + 29429114-29430934                                         29   4.7  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 467 RAVVQRCGHKLPQIKNMVSLGGQHQG 544
           RAVV+ C    P +KN +SLGG H G
Sbjct: 129 RAVVEFCDDG-PPVKNFISLGGPHAG 153


>07_03_1546 +
           27602598-27602917,27602995-27603052,27603130-27603252,
           27603896-27603992,27604095-27604131,27604244-27604349,
           27604547-27604604,27604705-27604802,27604911-27605030,
           27605622-27605667,27606336-27606522,27606747-27607263,
           27607361-27607453,27608101-27608286,27608364-27608574,
           27609263-27609387,27609518-27609664,27610114-27610236,
           27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 443 KPMTLNPFDSFGSAANFSHTYSTWRFGFMKYPFSKSSTVLLPIWRDRT*TPGMFFS 276
           +P+   P  S GS+A    +Y TW   F     + SS  +  +W  R   P   FS
Sbjct: 159 EPVVFPPLKSVGSSAQAEISYLTWNPKFQHILATASSNGMTVVWDLRNQKPLTSFS 214


>02_03_0192 -
           16204575-16204582,16204798-16204966,16205708-16205785,
           16206442-16206567,16206723-16206968,16207368-16207487,
           16207947-16208198,16208441-16208517,16208581-16208680,
           16210071-16210511
          Length = 538

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 200 HPSSCGTAWVTHAACPLVLVPSKYS*RRTYL 292
           HP  CG A    A CPL L+P +   R  +L
Sbjct: 5   HPPPCGVAPAAAATCPLFLLPRRSLSRSLHL 35


>10_08_0939 +
           21696941-21697049,21697171-21697255,21698385-21698457,
           21698553-21698609,21698660-21698713,21699196-21699246,
           21699441-21699503,21700453-21700518,21700625-21700663,
           21702190-21702271,21703479-21703536,21703698-21703914,
           21704248-21704697
          Length = 467

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 467 RAVVQRCGHKLPQIKNMVSLGGQHQG 544
           RAV++ C    P +KN +S+GG H G
Sbjct: 132 RAVIEYCDGG-PPVKNFISIGGPHAG 156


>04_04_0920 + 29429114-29430934
          Length = 606

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 449 RGCQFIRAVVQRCGHKLPQIKNMVSLGGQHQGHLWHTSLWCLET 580
           R     RAV+  CG  L + + + SL  Q++ H W+ S  C+ET
Sbjct: 220 RDADAYRAVMAACG-ALGKPEMVASLLKQYKSHKWYPSESCVET 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,797,004
Number of Sequences: 37544
Number of extensions: 432338
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)