Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G20
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)          73   2e-13
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_53079| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   3.6  
SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)         29   4.8  
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)            29   6.3  
SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_54718| Best HMM Match : Palm_thioest (HMM E-Value=1.8e-07)
          Length = 144

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 41/93 (44%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
 Frame = +3

Query: 540 KGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWHDPLXERTYEANSVFLA 719
           +G+YG PHC       C+ VR+LLN  AY S     LVQA YWHDP+ E+ Y   S+FLA
Sbjct: 12  QGVYGFPHCPGDNSTLCNYVRELLNIGAYVS-----LVQAEYWHDPMNEKEYRDKSIFLA 66

Query: 720 DINN-----------VRTVNKTYIQNLNNLXRF 785
           DIN            ++T N TY +NL  L  F
Sbjct: 67  DINQEKFTLQRLIFVLQTKNPTYKENLMKLKNF 99


>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 252 SWFLQNIPREEHTWCLCSVS 311
           +WF   + R +H++CLCSVS
Sbjct: 815 TWFAGELMRRKHSYCLCSVS 834


>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 388 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 269
           ++  LGD+G   ++++N    Y +FGE   +  V S++GI
Sbjct: 238 VYKSLGDNGQAMVNYKNALCIYEKFGEEREQADVYSNIGI 277



 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 388 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 269
           I+  LGD G   ++++N    Y +FGE   +  V S++G+
Sbjct: 158 IYSSLGDDGQAILNYKNALCIYEKFGEKREQADVYSNIGL 197


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 202 PIVLWHGMGDTCCMSFSLGSFKIFLEKNIPGVYVL-SLQIGNNTVEDFENGYFMN-PNLQ 375
           P   +HG+     +     + K F E+ + G   L SLQ+ NN +   E G F N   L+
Sbjct: 156 PETTFHGLAALQRLRLHNNNLKTFSERTLQGTLSLKSLQLNNNLLTRIEPGTFRNLRGLE 215

Query: 376 VEYV 387
           + Y+
Sbjct: 216 ILYL 219


>SB_53079| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 772

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 388 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 269
           + I LGD+G   ++F+N    Y +FGE   +  V +++GI
Sbjct: 310 VFISLGDNGQAMVNFKNALCIYEKFGEECKQADVYNNIGI 349


>SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)
          Length = 875

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/68 (20%), Positives = 30/68 (44%)
 Frame = +3

Query: 492 INYHKLKTWCLSEVSTKGIYGIPHCGALRHETCDDVRKLLNYAAYNSWVQNSLVQATYWH 671
           + Y+  +T+    +  + +  + +     H T     +L+      ++  + L+Q TY H
Sbjct: 25  VQYYTQQTYATGTIHNRLMQQVQYYTQQTHSTGTIHNRLIQQVLSTTYRHDVLLQTTYRH 84

Query: 672 DPLXERTY 695
           D L + TY
Sbjct: 85  DVLLQTTY 92


>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 403 PLTSHIHIQLGDSGS*NIHFQNLQQYYCQFGETEHKH 293
           PLT H HI+L  +   +I   + Q  + +   T+H H
Sbjct: 206 PLTQHTHIRLPSTQHTHIRLPSTQHSHIRLPSTQHSH 242


>SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)
          Length = 582

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 243 HAACVTHAVPQDDGCRRCAY 184
           H  C  H V + DGCR C Y
Sbjct: 81  HKPCCHHKVEKPDGCRLCRY 100


>SB_26492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -1

Query: 388 IHIQLGDSGS*NIHFQNLQQYYCQFGETEHKHQVCSSLGI 269
           +++ LGD+G   ++++N    Y +FGE   +  V +++G+
Sbjct: 157 LYMTLGDNGQAMVNYKNALCIYEKFGEERKQADVYNNIGV 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,803,778
Number of Sequences: 59808
Number of extensions: 531108
Number of successful extensions: 1111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)