Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G19
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    29   0.82 
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    27   2.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.8  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   5.8  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   5.8  

>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 330 LKYLRTQRDAKSKALIWIKVV-FADDHGDICNIGINTSVA*SAQH 461
           LK L T RD   K L+++ ++ +A  H D+C + +NT V  S ++
Sbjct: 59  LKNLAT-RDITLKKLVYLYLINYAKTHPDLCILAVNTFVKDSEEY 102


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 250 IQRRLGERVFKISDGIAEYLKNILDRN 170
           IQ+R+GE +  +++ +AEY  +I D+N
Sbjct: 499 IQKRVGEYMGDVNNIVAEYRNDISDKN 525


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 348  VFGGTSIMLVSSEGPSSSFLVVVFAIVSLLVLLYKEGW 235
            +FG T + L  + GP+ +F  +  A+V L  + + EGW
Sbjct: 1416 IFGLTKLGL--NGGPNKNFRSIRNALVLLFTMTFGEGW 1451


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 824 GVSXPRNDKGVDYVEL 777
           GVS PR D G+D +EL
Sbjct: 140 GVSTPRTDSGIDDIEL 155


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 203 NPVRDFKNSFAQPSLYNSTKSETIANTTTKKDEDGPSDDTSMIEVPPNTAG 355
           NP     NS  QPS+ N  KSE   + + +      S     ++ PP   G
Sbjct: 445 NPEEPPSNSDKQPSMSNGPKSEVSPSQSQQAPLIQSSTSPVSLQFPPEVQG 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,862
Number of Sequences: 5004
Number of extensions: 67367
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)