Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G19
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0027 + 9667508-9668800                                           30   2.7  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    30   2.7  
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142...    29   4.6  
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336...    29   6.1  

>04_03_0027 + 9667508-9668800
          Length = 430

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 300 KTVLRMTLA*LKYLRTQRDAKSKALIWIKVVFADDHGDICNIGINTSVA 446
           K V+    A LKYL T++DAK + + WI ++   D       GI  SVA
Sbjct: 52  KVVVYTDHAALKYLLTKKDAKPRLIRWILILQEFDIEINNKKGIENSVA 100


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 300 KTVLRMTLA*LKYLRTQRDAKSKALIWIKVVFADDHGDICNIGINTSVA 446
           K ++    A LKYL T++DAK + L WI ++   D       G+  SVA
Sbjct: 543 KVIIYTNHAALKYLLTKKDAKPRLLRWILLLQEFDLEIKDKKGVENSVA 591


>03_01_0177 +
           1424773-1424850,1425307-1425391,1425498-1425577,
           1425771-1425898,1425962-1426049,1426187-1426277,
           1426712-1426881,1427151-1427438,1427527-1427643,
           1427924-1427976,1428029-1428090,1429042-1429118,
           1429269-1429322,1429417-1429476,1429581-1429658,
           1429805-1429851,1429933-1430051,1430280-1430364,
           1430443-1430557,1430662-1430784,1430869-1430969,
           1431346-1431475
          Length = 742

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 188 LQIFGNPVRDFKNSFAQPSLYNSTKSETIANTTTKKDEDGPSDDTSMIEVPPNT 349
           +++ G+  +  K SF      NST+S  ++      DE+  ++D  +I+   NT
Sbjct: 257 IKVAGHRWKGNKTSFGDSDEENSTQSNELSELEEDGDEEESANDNELIDANVNT 310


>01_05_0141 -
           18532695-18532709,18533255-18533365,18533585-18533617,
           18534011-18534140,18534219-18535660,18535990-18536358
          Length = 699

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 588 EKVQTGQVIXVPELECPLGQRRDALGNCRXRXLEVTIQNIKRVLSKCTGFP 740
           + VQ   +  +P+ +C L  +  A GN       + +Q  +++L KC G P
Sbjct: 323 QTVQLYHLGCIPDKDCWLLFQHYAFGNQHESEQSILVQIGRKILQKCGGLP 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,643,935
Number of Sequences: 37544
Number of extensions: 418426
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)