Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G19
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2)                32   0.67 
SB_45335| Best HMM Match : Runt (HMM E-Value=0)                        28   8.2  
SB_15977| Best HMM Match : Pkinase (HMM E-Value=2e-06)                 28   8.2  
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_49202| Best HMM Match : Herpes_UL1 (HMM E-Value=3.2)
          Length = 304

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = -3

Query: 454 ADYATLVFMPMLHISPWSSANTTFIQISALLLASRCVRRYF 332
           ADY+   F P++HI+P S + +++IQ+ A+  A   VR YF
Sbjct: 133 ADYSN--FKPIVHIAPVSQSESSYIQLVAITQAG--VRLYF 169


>SB_45335| Best HMM Match : Runt (HMM E-Value=0)
          Length = 496

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 207 PSEILKTLSPNLLCIIAPKAKQ*QIPLPKRMKTV 308
           P E++KT SPN +C + P   +    LP   K V
Sbjct: 26  PGELVKTDSPNFVCSVLPSHWRCNKTLPVAFKVV 59


>SB_15977| Best HMM Match : Pkinase (HMM E-Value=2e-06)
          Length = 429

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 267 KQ*QIPLPKRMKTVLRMTLA*-LKYLRTQRDAKSKALIWIKVV--FADDHGDI 416
           K+ Q P+P+ +   + + +   L YL+ +     + ++WI V+  + DD GD+
Sbjct: 290 KRLQNPIPEHILGKMAVAIVKALHYLKEEHGVMHRGMVWITVIDNYDDDGGDV 342


>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 263 SETIANTTTKKDEDGPSDDTSMIEVPPNTAGC 358
           S+T      + DED  SDD+  I +PP   GC
Sbjct: 252 SKTAHTVAFQLDEDPFSDDSGSIIIPPPPPGC 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,455,823
Number of Sequences: 59808
Number of extensions: 520299
Number of successful extensions: 1187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)