Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G19
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   8.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = -3

Query: 334 FNHASVIRRTVFILFGSGICYCFAFGAIIQRRL----GERVFKISDG 206
           F   S +R  VF L  S      AFG  +   L    GER+ K++ G
Sbjct: 598 FGPLSNVRFAVFALGSSAYPNFCAFGRYVDNLLGELGGERLLKLAQG 644


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 286 SGICYCFAFGAIIQ 245
           +G+C  F FGA+++
Sbjct: 308 TGVCLTFVFGALLE 321


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 286 SGICYCFAFGAIIQ 245
           +G+C  F FGA+++
Sbjct: 308 TGVCLTFVFGALLE 321


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 360 WHPAVFGGTSIMLVSSE 310
           W PA +GG + + V SE
Sbjct: 84  WDPAEYGGVTELYVPSE 100


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 360 WHPAVFGGTSIMLVSSE 310
           W+P  +GG  ++ V SE
Sbjct: 97  WNPEEYGGVEMLYVPSE 113


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 756 HINRRRENRYIWII 715
           +I  R+ N YIWI+
Sbjct: 363 NIYERQNNEYIWIV 376


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 246 KEGWAKEFLKSRTGLPNI*RISW 178
           KE W +  L+   G+ NI  I W
Sbjct: 185 KEFWERRTLQISDGIENIGSIRW 207


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 246 KEGWAKEFLKSRTGLPNI*RISW 178
           KE W +  L+   G+ NI  I W
Sbjct: 238 KEFWERRTLQISDGIENIGSIRW 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,808
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)