Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G18
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    33   0.076
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   3.8  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   6.6  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   6.6  

>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 196 STLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXXFLPIYSQAKKDKDQGAYEDFLEC 375
           +++GDLLRA   NPTLA I                  FL + ++       G  E+F++ 
Sbjct: 26  TSIGDLLRACGQNPTLAEI---TEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKG 82

Query: 376 LKLYDKNENGLM 411
            +++DK+  G++
Sbjct: 83  FQVFDKDATGMI 94


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 108 MSDLSKNDVER-ASFAFSIYDFEGKGKID 191
           +++L   DV R  SF F +YDF G G +D
Sbjct: 605 IAELKFRDVMRNISFIFELYDFNGDGFMD 633


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 132 VERASFAFSIYDFEGKGKIDAFNLGRS 212
           +E A    SIYDF    +I+A N+G+S
Sbjct: 117 IEDAPPTQSIYDFSSSRQINALNVGQS 143


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -3

Query: 245 ASVGFELSALRRSPKVEGIDLAFAF-KVVD*EGERRPFNVVLAEVAHF-VWCLSVPSRVF 72
           A VGF+       PK+EG+ ++  + + +D   E        AE  +    CL +  R+ 
Sbjct: 565 AVVGFDFQRKYSKPKLEGVVVSKRYEEAIDLIAEEIDQEEKEAEARNVRKTCLLLWKRLI 624

Query: 71  TGRRSRQEV 45
           TG R RQ V
Sbjct: 625 TGLRIRQRV 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,674
Number of Sequences: 5004
Number of extensions: 55088
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)