Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G18
         (937 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light c...    48   1e-05
L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin l...    48   1e-05
Z81120-4|CAB03346.1|  142|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AJ132193-1|CAA10601.1|  149|Caenorhabditis elegans calmodulin pr...    33   0.22 
AF016429-2|AAB65364.1|  149|Caenorhabditis elegans Calmodulin pr...    33   0.22 
AF016671-4|AAB66110.2|  338|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z70267-5|CAA94209.2|  143|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U00050-11|AAM22061.1|   90|Caenorhabditis elegans Myosin light c...    28   8.3  

>U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light
           chain protein 3, isoforma protein.
          Length = 153

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
 Frame = +1

Query: 202 LGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXX--FLPIYSQAKKDKDQGAYEDFLEC 375
           +GD+ RA    PT A +                    +LP+Y Q  K+K+QG Y DF E 
Sbjct: 29  VGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEWLPMYEQLAKEKEQGTYADFYEG 88

Query: 376 LKLYDKNENGLMXXXXXXXXXXXXXXXXDDSEVAEVTKDCMDPEDDDGMI 525
           LK++DK E G +                   E  E+ K     ED +GM+
Sbjct: 89  LKVFDKEETGKILAAELRHILLALGERLSADEADELLKGV---EDGEGMV 135



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 153 FSIYDFEGKGKIDAFNLGRSPESAQLKPHTG--NHRETRWYKEEG-REAAHTRRVPSHLQ 323
           F++YD E  GKID   +G    +A LKP          + +K +G +       +P + Q
Sbjct: 13  FNLYDEELDGKIDGTQVGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEWLPMYEQ 72

Query: 324 PSKERQR 344
            +KE+++
Sbjct: 73  LAKEKEQ 79


>L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin
           light chain protein.
          Length = 153

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
 Frame = +1

Query: 202 LGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXX--FLPIYSQAKKDKDQGAYEDFLEC 375
           +GD+ RA    PT A +                    +LP+Y Q  K+K+QG Y DF E 
Sbjct: 29  VGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEWLPMYEQLAKEKEQGTYADFYEG 88

Query: 376 LKLYDKNENGLMXXXXXXXXXXXXXXXXDDSEVAEVTKDCMDPEDDDGMI 525
           LK++DK E G +                   E  E+ K     ED +GM+
Sbjct: 89  LKVFDKEETGKILAAELRHILLALGERLSADEADELLKGV---EDGEGMV 135



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 153 FSIYDFEGKGKIDAFNLGRSPESAQLKPHTG--NHRETRWYKEEG-REAAHTRRVPSHLQ 323
           F++YD E  GKID   +G    +A LKP          + +K +G +       +P + Q
Sbjct: 13  FNLYDEELDGKIDGTQVGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEWLPMYEQ 72

Query: 324 PSKERQR 344
            +KE+++
Sbjct: 73  LAKEKEQ 79


>Z81120-4|CAB03346.1|  142|Caenorhabditis elegans Hypothetical
           protein T12D8.6 protein.
          Length = 142

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 25/80 (31%), Positives = 38/80 (47%)
 Frame = +1

Query: 172 KAKARSMPSTLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXXFLPIYSQAKKDKDQG 351
           K   R     +GD+LRAL  NPT A I                  F+PI+    K++++ 
Sbjct: 17  KGDERISVQQVGDVLRALGQNPTEAEIHKCVGSFDREARLSFED-FVPIFQSVSKNREKH 75

Query: 352 AYEDFLECLKLYDKNENGLM 411
             E+F+E L  +DK  NG++
Sbjct: 76  TVEEFVEGLSHFDKEGNGMI 95


>AJ132193-1|CAA10601.1|  149|Caenorhabditis elegans calmodulin
           protein.
          Length = 149

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = +1

Query: 202 LGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXX-FLPIYSQAKKDKDQGAYEDFLECL 378
           LG ++R+L  NPT A +                   FL +   A+K KD  + E+  E  
Sbjct: 33  LGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM--MARKMKDTDSEEEIREAF 90

Query: 379 KLYDKNENGLMXXXXXXXXXXXXXXXXDDSEVAEVTKDCMDPEDDDGMI 525
           +++DK+ NG +                 D EV E+ ++     D DG +
Sbjct: 91  RVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQV 137


>AF016429-2|AAB65364.1|  149|Caenorhabditis elegans Calmodulin
           protein 1 protein.
          Length = 149

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = +1

Query: 202 LGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXX-FLPIYSQAKKDKDQGAYEDFLECL 378
           LG ++R+L  NPT A +                   FL +   A+K KD  + E+  E  
Sbjct: 33  LGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM--MARKMKDTDSEEEIREAF 90

Query: 379 KLYDKNENGLMXXXXXXXXXXXXXXXXDDSEVAEVTKDCMDPEDDDGMI 525
           +++DK+ NG +                 D EV E+ ++     D DG +
Sbjct: 91  RVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--DIDGDGQV 137


>AF016671-4|AAB66110.2|  338|Caenorhabditis elegans Hypothetical
           protein W09G10.3 protein.
          Length = 338

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 KMSDLSKNDVERASFAFSIYDFEGKGKID 191
           +M +   N   RA FAF + D EGKG++D
Sbjct: 178 EMGNYHINSSARAQFAFQLMDEEGKGRVD 206


>Z70267-5|CAA94209.2|  143|Caenorhabditis elegans Hypothetical
           protein K04C1.4 protein.
          Length = 143

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +1

Query: 208 DLLRALNSNPTLATIXXXXXXXXXXXXXXXXXXFLPIYSQAKKDKDQGAYEDFLECLKLY 387
           ++LR+L+ NP  + +                  FLP+ S  + +K   + EDF++ L  +
Sbjct: 32  EVLRSLDENPKNSDVHQCLAKFDKTARISFEN-FLPVLSHVRNNKIPYSMEDFIKGLSHF 90

Query: 388 DKNENGLM 411
           DK   G +
Sbjct: 91  DKEGEGFI 98


>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 102 HKMSDLSKNDVERASFAFSIYDFEGKGKIDAFNLGRSPESAQLKPHTGNHR--ETRWYKE 275
           H M+ +S +    A    ++YDF G G+ +  +L R  +  ++  +  N+   E R Y  
Sbjct: 89  HDMNTVSSSSSSSAPLFVALYDFHGVGE-EQLSL-RKGDQVRILGYNKNNEWCEARLYST 146

Query: 276 EGREAAHTRRV 308
              +A++ RR+
Sbjct: 147 RKNDASNQRRL 157


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 102 HKMSDLSKNDVERASFAFSIYDFEGKGKIDAFNLGRSPESAQLKPHTGNHR--ETRWYKE 275
           H M+ +S +    A    ++YDF G G+ +  +L R  +  ++  +  N+   E R Y  
Sbjct: 94  HDMNTVSSSSSSSAPLFVALYDFHGVGE-EQLSL-RKGDQVRILGYNKNNEWCEARLYST 151

Query: 276 EGREAAHTRRV 308
              +A++ RR+
Sbjct: 152 RKNDASNQRRL 162


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 102 HKMSDLSKNDVERASFAFSIYDFEGKGKIDAFNLGRSPESAQLKPHTGNHR--ETRWYKE 275
           H M+ +S +    A    ++YDF G G+ +  +L R  +  ++  +  N+   E R Y  
Sbjct: 104 HDMNTVSSSSSSSAPLFVALYDFHGVGE-EQLSL-RKGDQVRILGYNKNNEWCEARLYST 161

Query: 276 EGREAAHTRRV 308
              +A++ RR+
Sbjct: 162 RKNDASNQRRL 172


>U00050-11|AAM22061.1|   90|Caenorhabditis elegans Myosin light
           chain protein 3, isoformb protein.
          Length = 90

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 153 FSIYDFEGKGKIDAFNLGRSPESAQLKPHTG--NHRETRWYKEEG-REAAHTRRVPSHLQ 323
           F++YD E  GKID   +G    +A LKP          + +K +G +       +P + Q
Sbjct: 13  FNLYDEELDGKIDGTQVGDVARAAGLKPTQAMVTKAAGQEFKRKGEKRLTFEEWLPMYEQ 72

Query: 324 PSKERQR 344
            +KE+ R
Sbjct: 73  LAKEKVR 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,418
Number of Sequences: 27780
Number of extensions: 338894
Number of successful extensions: 934
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)