Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_G16
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 29 0.65
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 29 1.1
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 1.5
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 28 2.0
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 27 3.5
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos... 27 3.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.5
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 27 3.5
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 8.1
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 26 8.1
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 ENLDPADDPKNIKRPCPN-FDLNCIREYFSRNSQCQLVRGPVP 249
++++ D+ + K PC + F NC++++ + C L R VP
Sbjct: 112 DDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +1
Query: 169 CPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTVEYHDVKTRGFDT-I 345
CPN + I + RGP + L + + D+ NL D D +
Sbjct: 129 CPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIK-DVNWENLDYLIVDTPPGTSDEHL 187
Query: 346 KIIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIV 474
+++F+ NS + V+ Q + L + + RKA PI+
Sbjct: 188 SLVQFFKNSGIDGAVVVTTPQEVALQDVRKEIDFCRKASIPIL 230
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 157 IKRPCPN-FDLNCIREYFSRNSQCQLVRGPVPDP 255
I+ PC + F NCI+ + N C + R PV DP
Sbjct: 410 IQLPCKHYFHENCIKPWLRVNGTCAICRAPV-DP 442
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 193 CSSSRSSDRVF*CFLGHRPDPSSLQKQQQKRS 98
C S + +D + C+ P P++LQKQQQ S
Sbjct: 571 CDSEKENDDLE-CYFRTPPKPTTLQKQQQSPS 601
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 511 LEFHSQLPMRHFLQLALWLSYC 446
LEF+S L RHF+ L L +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220
>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 298 NYYSVYLLCSNLKVVDLVQVPLLIDIENFLRNIHE----CSSSRSSDRVF*CFLGHRPDP 131
NY YL + V L +PLL + N+ + ++E CS+ ++R+ C P P
Sbjct: 316 NYRQSYLRIDAIAVHKLKSIPLLSTVSNWFKKMYEHRANCSALIETERLS-CLQATIPLP 374
Query: 130 S 128
S
Sbjct: 375 S 375
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 3.5
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Frame = +1
Query: 349 IIEFYIN-----SKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLT 513
+IE Y+N TE + A V ++AS T + + R D L +D
Sbjct: 527 LIELYLNYDCISGNTENIYERAIVTLSRIASQST----SDPPPSFVFRDDQLVIDKPGF- 581
Query: 514 FTAVFPSISDL-QLSNAEVFSYVHEINPKF 600
V+ +++D+ QL+++ + SYVH NP +
Sbjct: 582 ---VYHTLNDIPQLNSSTIGSYVHSHNPPY 608
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 100 IASAVAFGENLDPADDPKNIKRPCPNF 180
I S A+GE L D NI+ P P+F
Sbjct: 23 INSNYAYGEQLQSNDQYNNIQHPAPSF 49
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +1
Query: 130 LDPADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTVE 309
LD ++ P + + DLN ++ Y++ S +V P + ++ D PN + V+
Sbjct: 486 LDSSNAPHS--QSAATHDLNDVKSYYNTRSSHSVVPNPTNQKVSITGAAADGPNGSAPVD 543
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 319 HHDILRLNYYSVYLLCSNLKVVDLVQVPLLIDIENFLRNIHECSSSRSSDRVF 161
H D + S+ L L V +Q+P L + N+H SS+S+D +
Sbjct: 136 HPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLH---SSKSTDHAY 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,675
Number of Sequences: 5004
Number of extensions: 57573
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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