Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G16
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61250.2 68418.m07684 glycosyl hydrolase family 79 N-terminal...    33   0.33 
At5g61250.1 68418.m07683 glycosyl hydrolase family 79 N-terminal...    33   0.33 
At3g07950.1 68416.m00972 rhomboid protein-related contains 6 tra...    31   1.3  
At5g52290.1 68418.m06489 hypothetical protein                          29   3.1  
At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger) fa...    29   4.1  
At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa...    29   4.1  
At5g16430.1 68418.m01920 hypothetical protein                          29   5.4  
At1g26720.1 68414.m03254 expressed protein ; expression supporte...    29   5.4  
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa...    28   7.1  
At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger) fa...    28   7.1  
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR...    28   7.1  

>At5g61250.2 68418.m07684 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 539

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 46  YFFKMWFEQCLCLSVLGLIASAVAFGENLDPADDPKNIKRPC-PNFDLNCIREYFSRNSQ 222
           +F + W+ + L LS  G++        NL P +DPK + +   PN+ L+ I E F+  +Q
Sbjct: 243 FFEEQWYSELLRLSGPGVLDVLTHHIYNLGPGNDPKLVNKILDPNY-LSGISELFANVNQ 301

Query: 223 CQLVRGP 243
                GP
Sbjct: 302 TIQEHGP 308


>At5g61250.1 68418.m07683 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 539

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 46  YFFKMWFEQCLCLSVLGLIASAVAFGENLDPADDPKNIKRPC-PNFDLNCIREYFSRNSQ 222
           +F + W+ + L LS  G++        NL P +DPK + +   PN+ L+ I E F+  +Q
Sbjct: 243 FFEEQWYSELLRLSGPGVLDVLTHHIYNLGPGNDPKLVNKILDPNY-LSGISELFANVNQ 301

Query: 223 CQLVRGP 243
                GP
Sbjct: 302 TIQEHGP 308


>At3g07950.1 68416.m00972 rhomboid protein-related contains 6
           transmembrane domains; similar to phosphatidyl inositol
           glycan class T (GI:14456615) [Homo sapiens]
          Length = 304

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 226 QLVRGPVPDPLPLSYYRVDIPNSNLTVEYHDVKTRG 333
           +L+R PV DP+ L ++R+    SN T E HD  T G
Sbjct: 222 ELLR-PVIDPIALIFHRMLCGRSNATSEDHDYSTSG 256


>At5g52290.1 68418.m06489 hypothetical protein
          Length = 1569

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = +1

Query: 244 VPDPLPLSYYRVDIPNSNLTVEYHDVKTRGFDTI--KIIEFYINSKTEKLVLAAEVQSLK 417
           VPD + + Y   +I +S+L V Y D K  G D I  K     I  +T +L    + + +K
Sbjct: 75  VPDRVSVDYRVFEIDDSSLGVYYSDEKDDG-DAIADKATPKIIELETPEL----DFEMVK 129

Query: 418 LASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAV 525
                 I + ++  +E I   D +  DY T   T+V
Sbjct: 130 YEGSDIILQNSKDIQEQIYSVDYIPSDYFTENNTSV 165


>At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger)
           family protein (ATL5) identical to RING-H2 zinc finger
           protein ATL5 [Arabidopsis thaliana]
           gi|4928401|gb|AAD33583
          Length = 257

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 142 DDPKNIKRPCPN-FDLNCIREYFSRNSQCQLVRGPVPDPLPLS 267
           DD   +   C + F ++CI  +F   S C L R PV    P++
Sbjct: 123 DDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVT 165


>At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 130 LDPADDPKNIKR-PCPN-FDLNCIREYFSRNSQCQLVRGPVP 249
           L+  DD ++I   PC + FD  C+ E+F R+  C L R  +P
Sbjct: 281 LEEFDDGRSIVTLPCGHEFDEECVLEWFVRSHVCPLCRLELP 322


>At5g16430.1 68418.m01920 hypothetical protein
          Length = 85

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +1

Query: 73  CLCLSVLGLIASAVAFGENLDPADDPKNIKRPCPNFDL---NCIREYFSRNSQCQLVRGP 243
           C  +S  G   S+  FGE+L   D P+ I  PC + +L     IR        C L   P
Sbjct: 16  CCEVSGYGYYCSSCEFGEHLKCIDWPEIINHPCHSRNLLKIVSIRTIDYTGKVCHLCNNP 75

Query: 244 VPDPL 258
           +  P+
Sbjct: 76  LGYPM 80


>At1g26720.1 68414.m03254 expressed protein ; expression supported
           by MPSS
          Length = 169

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 497 STSNASLLTIGSLAFLLYLKIVFGEANFKD 408
           +T   +LL IGS  FLL   I FG  N +D
Sbjct: 2   TTPTYNLLCIGSFMFLLCFSIGFGRKNLQD 31


>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 376

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 178 FDLNCIREYFSRNSQCQLVRGPVPDP 255
           F LNCI  +   NS C L RG +  P
Sbjct: 166 FHLNCIDTWLQSNSTCPLCRGTLFSP 191


>At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 227

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +1

Query: 175 NFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTVEYHDVKTRGFDTIKII 354
           +F ++CI  +F   S C L R PV  P  +        +S LT      +    D   II
Sbjct: 130 SFHVDCIDTWFRSRSTCPLCRAPVQPPFQVIETGSSSSSSPLTFPTEGCEREPIDLAGII 189


>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1215

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -3

Query: 271 SNLKVVDLVQVPLLIDIENFLRNIHECSSSR 179
           +NLK+++L  +  L+++ +F+ N+H+ S  R
Sbjct: 865 TNLKILNLGYLSCLVELPSFIGNLHKLSELR 895


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,410
Number of Sequences: 28952
Number of extensions: 285862
Number of successful extensions: 767
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)