Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G15
         (865 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    30   1.7  
At4g25190.1 68417.m03626 hypothetical protein  contains Pfam pro...    29   4.0  
At1g05940.1 68414.m00623 amino acid permease family protein low ...    29   4.0  
At2g44930.1 68415.m05593 expressed protein contains Pfam profile...    29   5.3  

>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 130 SPNFCRSDCAPDLNTQSACL 71
           S  FCR DC+PD+N    C+
Sbjct: 242 SLRFCRKDCSPDMNCDVCCV 261


>At4g25190.1 68417.m03626 hypothetical protein  contains Pfam
           profile: PF04484 family of unknown function (DUF566)
          Length = 443

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/75 (22%), Positives = 37/75 (49%)
 Frame = -2

Query: 582 LKVLAYFSDTIFQLTKRIVRKQINSTITH*NDFKLLQLIMFTLASVSARKSRNAVYFHED 403
           ++V+    D I +   RI  K+IN  ++    ++ +++I++ L  +    ++  +YF E 
Sbjct: 332 IEVMDEIEDVIIKFLPRIHVKEINLRMSWVIKYQQVEIILYELTELIGMFNQELLYFEEM 391

Query: 402 ELNLAR*CLCEETHY 358
           + +L    L    HY
Sbjct: 392 DESLLSIPLFTVIHY 406


>At1g05940.1 68414.m00623 amino acid permease family protein low
           similarity to SP|P30823 High-affinity cationic amino
           acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
           Pfam profile PF00324: Amino acid permease
          Length = 569

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 83  LRIQIWRAIASTKIRGYHSIHLLANILDI*TNTSHNV 193
           L  QIW  I +  + G  ++H L++IL + T T ++V
Sbjct: 382 LHSQIWCGIVAGVLAGIFNVHSLSHILSVGTLTGYSV 418


>At2g44930.1 68415.m05593 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 515

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 416 YTAFLDFLADTDANVNII 469
           Y AFLDFL DTD +V+++
Sbjct: 390 YIAFLDFLIDTDQDVDLL 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,704
Number of Sequences: 28952
Number of extensions: 205063
Number of successful extensions: 285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)