Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G13
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   217   1e-57
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    29   1.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   1.9  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    27   3.3  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.7  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   7.7  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   7.7  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   7.7  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  217 bits (531), Expect = 1e-57
 Identities = 100/184 (54%), Positives = 126/184 (68%)
 Frame = +2

Query: 245 AIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKV 424
           A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE T DITKY+   +
Sbjct: 25  AAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFECTDDITKYTKHTM 84

Query: 425 FESIGKRTPIAVRFSTVGGESGSADTVRDPRXFAVKFYTDDGVWDLVGNNTPIFFIRDPT 604
           F  +GK+TP+  RFSTVGGE G+ DT RDPR FA+KFYTD+G++D+VGNNTP+FF+RDP 
Sbjct: 85  FSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVGNNTPVFFLRDPA 144

Query: 605 LFPSFIHTQKRNPATHLKDPXMFLGLFDLKXRDHPSTSFTCLENRGYSLMAYRXXNGYGS 784
            FP FIHTQKRNP   +KD  MF      +  +          + G +  +YR  +G+ S
Sbjct: 145 KFPLFIHTQKRNPQNDMKDATMFWDYLS-QNAESIHQVMILFSDLGGTPYSYRFMDGFSS 203

Query: 785 HTFQ 796
           HT++
Sbjct: 204 HTYK 207


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 587 FIRDPTLFPSFIHTQKRNPATHLKDPXM 670
           +++DPTL P F+HT  R   T   +P +
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNPLL 533


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 527 QQNXEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 402
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 818 TFEKFTXLGMYGNHIHXXVGRP-SGNTHGSPNK 723
           TFEK T    Y +  +   GRP  GN H S N+
Sbjct: 39  TFEKCTFNKYYSSSQYQHTGRPVGGNIHSSSNQ 71


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 302 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 436
           ++++ F  E  P+ V+ A GAG  G  E T  +    A KV++++
Sbjct: 59  NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 468 ENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 304
           + +  I  L    SNT A      S V + Y K+P  +A T R  I+S +K  IS
Sbjct: 294 DTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 668 MFLGLFDLKXRDHPSTSFTCLENRGY 745
           MF  L DLK R +P TS T ++ R +
Sbjct: 684 MFEDLADLKVRRNPETSRTVMDRRTF 709


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 501 VSADPLSPPTVENLTAIGVLLPMDSNTL 418
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,154
Number of Sequences: 5004
Number of extensions: 74281
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)