Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G13
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_32193| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   30   2.0  
SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -1

Query: 486 LSPPTVENLTAIGVLLPMDSNTLAAL------YLVMS*VTSKYPKAPAPLACTTRSGIRS 325
           LSP TV NLT   V  P+ +N LA +      Y+V     SK  +      C T    + 
Sbjct: 154 LSPLTV-NLTGSCVSGPIRTNDLALITCPSEKYIVKQSALSKCFQNDKAFLCPTNILHKI 212

Query: 324 LSKDDISSRKLTSCNKAGPFLPTVC 250
            S D +   KLT    A  FLPT C
Sbjct: 213 GSFDWLGHTKLTKLKYARNFLPTSC 237


>SB_32193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
 Frame = +2

Query: 458 VRFSTVGGESGSADTVRDPRXFAVKFYTDDGVWDLVGNNTPIFFIRDPTLFPSFIHTQKR 637
           ++F    G  G +  VR PR   VK+     +   + N   +    DP L          
Sbjct: 129 LQFKDPAGHFGMSAEVRSPRPSNVKYRVGQVIRHKLWNYRAVIVGWDPKLKAPDFWRDAN 188

Query: 638 NPA--THLKDPXMFLGLFDLKXRDHPSTSFTCLEN 736
           +PA   H KD   +  L D + R  P  ++   EN
Sbjct: 189 HPADKKHWKDMPNYALLVDTRDRPSPQITYVPEEN 223


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 242 TAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAK 421
           T + T  ++GP         + + S  R+R+ E    + G G + Y     +IT+YS ++
Sbjct: 177 TQVSTTRRSGPDGKTTTTTREVVDSGGRQRVTESTRTSPGIGRYDYTSARRNITEYSPSQ 236


>SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
 Frame = +2

Query: 257 VGKNGPALLQDVNFLDEMSSFDRERIPERVVH------AKGAGAFGYFEVTHDITKYSAA 418
           +  N   LLQ + F  +M  F  ++   R +H      +KG     YF    DI   + +
Sbjct: 258 ITSNAMGLLQSLTFFTQMRFFCHKQAVGRTLHILTTPDSKGKAVVDYFSAKTDILPSACS 317

Query: 419 KVFESIGKRTPIAVRFSTVGGESGSA 496
              E  G    +  R    G +S  A
Sbjct: 318 SFTEGAGNNALLTGRCHRWGRDSSGA 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,092,108
Number of Sequences: 59808
Number of extensions: 547261
Number of successful extensions: 1304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)