Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G12
         (1245 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.062
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.082
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.33 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.44 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   7.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   7.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.062
 Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
 Frame = +3

Query: 435 PXSXPPPXRXL---VXXPP--RXXPXPPPP-SXPSPXXXXPPXXXXXXLXXXXFXHPPAP 596
           P   PPP       +  PP  R  P PPPP S PS     PP      +       P  P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 597 GGGXXXXPPL 626
           G      PPL
Sbjct: 397 GRSAPALPPL 406



 Score = 31.1 bits (67), Expect = 0.33
 Identities = 16/55 (29%), Positives = 19/55 (34%)
 Frame = +2

Query: 1055 PPPPQNXTXXXXXXPPSPXXSXSPPXXXXPKXQKXXXPPPAXAXXXKXPXPLPPP 1219
            PPPP++        PP    S  PP            PPP  +       P PPP
Sbjct: 340  PPPPRSNAAGSIPLPPQ-GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 36/177 (20%), Positives = 42/177 (23%), Gaps = 5/177 (2%)
 Frame = +1

Query: 112 PPPPXPXXXLXXPXGKFFXPTPNXLXL*XPXXXSPPPXGGXGKKXKXXGXXXLXPPXXPX 291
           PPPP P              + N      P    PP     G            PP  P 
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSL---PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 292 XXPPFSPPPXXXXHKQKXXXPPXTKKNKXXPCXXSSXXQKXXGXGXXTPSXXXPLXVLSX 471
             P     P      +    PP        P             G  + +   P+     
Sbjct: 368 SAPSTGRQPPPLSSSRAVSNPPAPP-----PAIPGRSAPALPPLGNASRTSTPPVPTPPS 422

Query: 472 XPPLGXXPXPP--PPXXP---PPXXXLPPXXPXXXXXXXXFXTRPPPGGGXNXXPPS 627
            PP      PP  PP  P   P    LPP  P            PP        PP+
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 435 PXSXPPPXRXLVXXPPRXXPXPPPPSXPSP 524
           P   PPP    V  PP   P P  P   +P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.1 bits (72), Expect = 0.082
 Identities = 19/55 (34%), Positives = 19/55 (34%)
 Frame = +3

Query: 435  PXSXPPPXRXLVXXPPRXXPXPPPPSXPSPXXXXPPXXXXXXLXXXXFXHPPAPG 599
            P S  PP       PP     PPPPS P P    PP      L        P PG
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAP-PMPAGPPSAPPPPLPASSAPSVPNPG 1747



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +1

Query: 418  GXGXXTPSXXXPLXVLSXXPPLGXXPXPPPPXXP-PPXXXLPP 543
            G     P    P+   S  PP    P PPPP    PP    PP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/55 (29%), Positives = 19/55 (34%)
 Frame = +1

Query: 436  PSXXXPLXVLSXXPPLGXXPXPPPPXXPPPXXXLPPXXPXXXXXXXXFXTRPPPG 600
            P    P  + +  PP      PPPP   PP    PP  P          + P PG
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSA-PPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 463 LSXXPPLGXXPXPPPPXXPPPXXXLPPXXP 552
           ++  PP    P PPPP   PP    PP  P
Sbjct: 1   MASLPPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 435 PXSXPPPXRXLVXXPPRXXPXPPPP 509
           P + PPP       PP   P PPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 23/67 (34%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
 Frame = -3

Query: 622 GGXXXXPPPGAGGCXKXXSXXXXXXXXGGXXXXG---EGXEGG-GGXGXXRGGXXTRXRX 455
           GG    PPPG GG              GG    G    G EGG GG G   GG       
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 454 GGGXEXG 434
            GG   G
Sbjct: 254 FGGGPGG 260


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/52 (28%), Positives = 17/52 (32%)
 Frame = +3

Query: 441 SXPPPXRXLVXXPPRXXPXPPPPSXPSPXXXXPPXXXXXXLXXXXFXHPPAP 596
           S PPP   ++   P   P P PP  P      PP              PP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +2

Query: 1055 PPPPQNXTXXXXXXPPSPXXSXSPPXXXXPKXQKXXXPPPAXAXXXKXPXPLPPP 1219
            PPPP           P+P     PP            PPP  A     P P PPP
Sbjct: 732  PPPPPPAVIVPT---PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 1056 PPPPKTXXXXXXANPPPXPXXPP 1124
            PPPP        A PPP P  PP
Sbjct: 761  PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +3

Query: 435 PXSXPPPXRXLVXXPPRXXPXPPPPSXPSPXXXXPPXXXXXXLXXXXFXHPPAP 596
           P   PPP   ++  PP   P PPPP         PP             + PAP
Sbjct: 748 PIPVPPP-APIMGGPP---PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
 Frame = +2

Query: 1097 PPSPXXSXSPPXXXXPKXQKXXXPPPAXAXXXKXP----XPLPPP 1219
            PP P  S   P    P       PPP+ A     P     P+PPP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
 Frame = +1

Query: 475  PPLGXXPXPPP---PXXPPPXXXLPPXXP 552
            P  G  P PPP   P  P P   +PP  P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
 Frame = +1

Query: 475  PPLGXXPXPPP---PXXPPPXXXLPP 543
            P +G  P PPP   P  P P   LPP
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPP 1228



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +3

Query: 435  PXSXPPPXRXLVXXPPRXXPXPPPPSXPSPXXXXPP 542
            P   PP  +  V  PP   P    P  P P    PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = -2

Query: 632 KEEGGXXXXPPPGGGRVXKXXXXQXXXGXXGGXXXXGGGXXGGGGXGXXPRGG 474
           K+  G    P   GGR           G  GG    G G    GG G   RGG
Sbjct: 125 KKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 538 GXXXXGEGXEGGGGXGXXRGGXXTRXRXGGG 446
           G    G G   GGG G  RGG   R    GG
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGGARGG 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.146    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,897
Number of Sequences: 5004
Number of extensions: 35824
Number of successful extensions: 264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)