Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G12
         (1245 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.34 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   7.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 477 PPRXXPXPPPPSXPSP 524
           PP+  P PPPPS   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 481 LGXXPXPPPPXXPPP 525
           LG    PP P  PPP
Sbjct: 332 LGDSDTPPKPAPPPP 346


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 66  PXXPPXXGXPXPXXGPPP 119
           P  P     P P  GPPP
Sbjct: 31  PQAPQRGSPPNPSQGPPP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.146    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,636
Number of Sequences: 438
Number of extensions: 9046
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42502302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)