Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_G10
(877 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 69 3e-12
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 69 4e-12
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 67 1e-11
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 64 2e-10
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 62 4e-10
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 60 1e-09
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 33 0.25
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 33 0.33
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 32 0.44
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 32 0.44
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 32 0.44
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 31 1.3
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 31 1.3
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta... 31 1.3
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 31 1.3
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 30 2.3
At4g14740.2 68417.m02267 expressed protein 29 3.1
At4g14740.1 68417.m02266 expressed protein 29 3.1
At1g70150.1 68414.m08072 zinc finger (MYND type) family protein ... 29 3.1
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 29 5.4
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 29 5.4
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 28 7.1
At3g22810.1 68416.m02875 expressed protein ; expression support... 28 9.4
At1g68330.1 68414.m07805 expressed protein 28 9.4
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 69.3 bits (162), Expect = 3e-12
Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 3/162 (1%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 356
KC C K+VY ++ A +HK CF+C C+ L +N + EG LYC+ + F
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNFKR 68
Query: 357 XXXXXXXXXXCLSMDTGDH-LKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAA 533
+ D L+GE G + + R E C C VY
Sbjct: 69 TGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTR--------EKCVGCDKTVYPI 120
Query: 534 EQMLARGRAWHKECFKC--GDCMKRLDSTNCCEGSDKDIYCK 653
E++ G +HK CFKC G C + EG +YCK
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGK---LYCK 159
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 338
KC C K+VY E+ G +HK CFKC + +N HEG+LYCK H
Sbjct: 109 KCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHH 162
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 474 IAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 653
+A A + C C VY +++ A R +HK CF+C C L +N + +YC+
Sbjct: 1 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSN-YNSFEGVLYCR 59
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 68.9 bits (161), Expect = 4e-12
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 4/164 (2%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 356
KC C K+VY + G+ +HK CF+C C L N S +G LYCK H +
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKT-HFEQ--- 65
Query: 357 XXXXXXXXXXCLSMDTGDHLKGENAGG--VRTNGACLEPRSIAKAPPG--EGCPRCGGYV 524
L ++G+ K G ++N A P ++ G + C C V
Sbjct: 66 -----------LFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTV 114
Query: 525 YAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCKV 656
Y E+M G ++HK CF+C L ++ D +YCKV
Sbjct: 115 YPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYA-ALDGVLYCKV 157
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 350
KC C K+VY E+ G +HK CF+C L ++ + +G LYCKV ++ F
Sbjct: 106 KCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLF 163
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 67.3 bits (157), Expect = 1e-11
Identities = 51/163 (31%), Positives = 68/163 (41%), Gaps = 4/163 (2%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 356
KC C K+VYA E A G+ +HK CFKC C+ L ++ S EG LYCK + F
Sbjct: 9 KCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKE 68
Query: 357 XXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPG--EGCPRCGGYVYA 530
S + ++A T P +A G E C C VY
Sbjct: 69 SG----------SFNKNFQSPAKSA-DKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYP 117
Query: 531 AEQMLARGRAWHKECFKC--GDCMKRLDSTNCCEGSDKDIYCK 653
E++ + +HK CFKC G C + EG +YCK
Sbjct: 118 IEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGI---LYCK 157
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 350
KC C K+VY E+ +HK CFKC + +N + EG LYCK A+ F
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLF 164
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 63.7 bits (148), Expect = 2e-10
Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 2/161 (1%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 356
KC C K+VY E A G+ +HK CFKC C+ L +N S EG +YC+ + F
Sbjct: 9 KCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKE 68
Query: 357 XXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAAE 536
T N R G + + C C VY E
Sbjct: 69 SGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMF--------SGTQDKCATCTKTVYPIE 120
Query: 537 QMLARGRAWHKECFKC--GDCMKRLDSTNCCEGSDKDIYCK 653
++ + +HK CFKC G C + EG +YCK
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGI---LYCK 158
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKF 350
KC C K+VY E+ +HK CFKC + +N + EG LYCK A+ F
Sbjct: 108 KCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLF 165
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 62.5 bits (145), Expect = 4e-10
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 356
KC C K+VY + G+ +HK CF+C C+ L +N S +G LYCK H +
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT-HFEQ--- 64
Query: 357 XXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPG--EGCPRCGGYVYA 530
L ++G+ K G P I+ G + C C VY
Sbjct: 65 -----------LFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYP 113
Query: 531 AEQMLARGRAWHKECFKC--GDC 593
E++ G +HK CF+C G C
Sbjct: 114 LEKIQMEGECFHKTCFRCAHGGC 136
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 501 CPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCK 653
C C VY + + G +HK CF+C C L +N D +YCK
Sbjct: 10 CNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSN-YSSMDGVLYCK 59
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCK 329
KC C K+VY E+ G +HK CF+C L ++ + + LYC+
Sbjct: 103 KCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCR 153
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 60.5 bits (140), Expect = 1e-09
Identities = 47/164 (28%), Positives = 65/164 (39%), Gaps = 4/164 (2%)
Frame = +3
Query: 177 KCPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCHARKFXX 356
KC C K+VY + G +HK CF+C C+ L +N S +G LYCK + F
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLFKE 68
Query: 357 XXXXXXXXXXCLSMDTGDHLKGENAGGVRTNGACLEPRSIAKAPPG--EGCPRCGGYVYA 530
+ DHL RT P ++ G + C C VY
Sbjct: 69 SGNYSKNFQAGKTEKPNDHL-------TRT------PSKLSSFFSGTQDKCATCKKTVYP 115
Query: 531 AEQMLARGRAWHKECFKC--GDCMKRLDSTNCCEGSDKDIYCKV 656
E++ G ++HK CF+C C S G +YCKV
Sbjct: 116 LEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGV---LYCKV 156
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 171 NPKCPKCGKSVYAAEERV---AGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 338
NP KC A E+ + A G WH CF C C++ + S+ G +Y K C+
Sbjct: 1234 NPPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRG-MYHKPCY 1291
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 486 PPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDC 593
PP C C + + A G WH +CF C C
Sbjct: 1235 PPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRC 1270
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 32.7 bits (71), Expect = 0.33
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 11/126 (8%)
Frame = +3
Query: 249 MCFKCGLCQKL---LDSTNCSEHEGELYCKVCHARKFXXXXXXXXXXXXCLSMDTGDHLK 419
MC KC + Q + + +CS G+ YCK+C K C G L
Sbjct: 2 MCMKCMIIQPVGASCSNISCSSSMGKYYCKIC---KLFDDDREIYHCPYCNLCRLGKGLS 58
Query: 420 GENAGGVRTNGACLEPRSIAKAPPGE-----GCPRCGGYVYAAE---QMLARGRAWHKEC 575
+ ++ N AC+ R I + E CP C Y++ + + L G H C
Sbjct: 59 IDYFHCMKCN-ACMS-RLIVEHVCREKCLEDNCPICHEYIFTSNSPVKALPCGHVMHSTC 116
Query: 576 FKCGDC 593
F+ C
Sbjct: 117 FQEYTC 122
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +3
Query: 180 CPKCGKSVYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHE--GELYC 326
C C ++ A G+ WH CF C C K + EH E YC
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC 251
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 489 PGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMK 599
P C C + + A G WH ECF C C K
Sbjct: 197 PHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDK 233
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 32.3 bits (70), Expect = 0.44
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Frame = +3
Query: 249 MCFKCGLCQKL---LDSTNCSEHEGELYCKVCHARKFXXXXXXXXXXXXCLSMDTGDHLK 419
MC KC L Q + +T+C G+ +CK+C K C G L
Sbjct: 62 MCMKCLLIQPIGANCSNTSCKSSMGKYFCKIC---KLYDDERKIYHCPYCNLCRVGKGLG 118
Query: 420 GENAGGVRTNGACLEPRSIAKAPPGE-----GCPRCGGYVYAAE---QMLARGRAWHKEC 575
+ ++ N AC+ R++ + E CP C Y++ + + L G H C
Sbjct: 119 IDYFHCMKCN-ACMS-RTLVEHVCREKCLEDNCPICHEYIFTSSSPVKALPCGHLMHSTC 176
Query: 576 FKCGDC 593
F+ C
Sbjct: 177 FQEYTC 182
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/61 (29%), Positives = 22/61 (36%)
Frame = +3
Query: 411 HLKGENAGGVRTNGACLEPRSIAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGD 590
H+ G G V NG PR I C C + + WH ECF+C
Sbjct: 144 HMYG--GGNVYANGDIYYPRPITFQMDFRICAGCNMEIGHGRFLNCLNSLWHPECFRCYG 201
Query: 591 C 593
C
Sbjct: 202 C 202
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +3
Query: 486 PPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMK 599
PP C C V E + G WH CF C C K
Sbjct: 342 PPLSMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDK 379
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Frame = +3
Query: 162 PADNPKCPKCG--KSVYAAEERV-AGGLKWHKMCFKCGLCQKLLDSTNCSEHEG------ 314
P NP CG S EE V G+ WH CF C C K + H
Sbjct: 338 PEVNPPLSMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPIAIHELENHVSNSRGKF 397
Query: 315 -----ELYCKVCHARK 347
E YC VC +K
Sbjct: 398 HKSCYERYCYVCKEKK 413
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +3
Query: 504 PRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDSTNCCEGSDKDIYCKVC 659
PRC L G +H C CGD + D + C + Y KVC
Sbjct: 72 PRCRSMPLTRPHTLREGNDYHSSCDTCGDEVSENDRSYHCPTCEM-CYHKVC 122
>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
domain-containing protein / S-locus protein, putative
similar to S-locus protein 5 GI:6069485 from [Brassica
rapa]; contains Pfam profile PF00226 DnaJ domain
Length = 496
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 180 CPKCGKS-VYAAEERVAGGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 338
C KCG S ++ R +W C +CG + D EH+G L + H
Sbjct: 335 CTKCGNSHIWVCTNRSKAKARW---CQECGQYHQAKDGDGWVEHKGTLVFEKAH 385
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -3
Query: 668 LAIANFAVNIFVGTFATVGGVQPFHAVATFEALLVP 561
+A FA +IF+GT T GGV A+ATF L P
Sbjct: 542 VAAVTFATSIFLGTQLTAGGV--LSALATFRILQEP 575
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 441 RTNGACLEPRSIAKAPPGEGCPRCGGYVYAAEQMLARGRAWHKECFKCGDCMKRLDS-TN 617
RT + P + PGEGC C + A ++ W + C C +R S N
Sbjct: 56 RTGSSTRHPLRVPGMKPGEGCFICHSKTHIA-KLCPEKSEWERNKI-CLQCRRRGHSLKN 113
Query: 618 CCEGSDKDIYCKVC 659
C E +++ K+C
Sbjct: 114 CPEKNNESSEKKLC 127
>At4g14740.2 68417.m02267 expressed protein
Length = 475
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -3
Query: 518 ATAARTALAGRSFSDRAGLQTSSVRPHTPRILALQVVAGVHREATSAATKAVAFGSEFAC 339
ATA ++ GR DR + R H +I A VAGV A + A A A + +C
Sbjct: 170 ATATQSKTVGRWLKDRREKKKEETRAHNAQIHAAVSVAGV---AAAVAAIAAATAASSSC 226
>At4g14740.1 68417.m02266 expressed protein
Length = 475
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -3
Query: 518 ATAARTALAGRSFSDRAGLQTSSVRPHTPRILALQVVAGVHREATSAATKAVAFGSEFAC 339
ATA ++ GR DR + R H +I A VAGV A + A A A + +C
Sbjct: 170 ATATQSKTVGRWLKDRREKKKEETRAHNAQIHAAVSVAGV---AAAVAAIAAATAASSSC 226
>At1g70150.1 68414.m08072 zinc finger (MYND type) family protein
contains Pfam profile PF01753: MYND finger
Length = 387
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 486 PPGEGCPRCGGYVYAAEQMLARGRAWHK-ECFKCGDCMKRLDSTN 617
PP C +CG Y + ++HK EC + + M+R+D N
Sbjct: 15 PPTRRCGQCGAVAYCSVSHQISHWSYHKEECERLEEQMRRVDLLN 59
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 228 GGLKWHKMCFKCGLCQKLLDSTNCSEHEGELYCKVCH 338
GG+ WH CF C C K + S Y K+C+
Sbjct: 2 GGV-WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCY 37
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = +3
Query: 480 KAPPGEGCPRCGGYVYAAEQMLARGRAW---HKECFKCG 587
K P GC +CGG + A RG C+KCG
Sbjct: 248 KRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCG 286
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Frame = +3
Query: 171 NPKCPKCGKSVYAAEERVAG---GLKWHKMCFKCGLCQKLLDSTNCSEHEG--------- 314
NP CG +A E + G+ WH CF C C K + + H
Sbjct: 280 NPPPSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKS 339
Query: 315 --ELYCKVCHARK 347
E YC VC +K
Sbjct: 340 CYERYCYVCKEKK 352
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 518 ATAARTALAGRSFSDRAGLQTSSVRPHTPRILALQVVAGVHREATSAATKAVAFGS 351
AT ++ GR DR + +R H +I A VAGV + A A S
Sbjct: 165 ATTTQSKTVGRWLKDRREKKKEEMRAHNAQIHAAVSVAGVAAAVAAIAAATAASSS 220
>At1g68330.1 68414.m07805 expressed protein
Length = 268
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 346 LRAWHTLQYSSPSCSEQLVESSNFWHRPHLKHILCHLRPPATRSSA 209
+R++H L S+ + + L H PH H L +PP RSS+
Sbjct: 159 IRSFHFLSRSNSTPNPNLDLLPKETHHPHKTHNLPKHKPPLRRSSS 204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,590
Number of Sequences: 28952
Number of extensions: 351718
Number of successful extensions: 1040
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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