Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_G08
(1315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.7
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Frame = -1
Query: 1072 SXAPPXHXXPSPXXXXILRXPAAXPPXXPALXPXP---PXXPKXGXSLXXXLTPPQXXXX 902
S APP P P LR P + PP P P P P + L PP
Sbjct: 121 SAAPPSAPAP-PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179
Query: 901 PLPXHP 884
P+ P
Sbjct: 180 PVKSPP 185
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.4
Identities = 26/106 (24%), Positives = 29/106 (27%), Gaps = 6/106 (5%)
Frame = -2
Query: 1176 PLPXPTXXPAXXXXPXAPXXXPPXTPXXPXXGXXXPXHPP----XTXXXHRLXXXSSAXP 1009
PLP P P P TP P P PP + + S A P
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084
Query: 1008 XPXP--XPXXXSRXXXXPPPXXXXXXXXXSPXPKXXPLPXXPIPXP 877
P P P PP P P P P+P P
Sbjct: 1085 VPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP----PVPKP 1126
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/84 (23%), Positives = 24/84 (28%), Gaps = 3/84 (3%)
Frame = -1
Query: 1135 PAGXXXVPPXDPXXXXXGXXXSXAPPXHXXPSPXXXXILRXPA---AXPPXXPALXPXPP 965
PA +PP P S P H +P + PA A P P L P
Sbjct: 963 PAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAP 1022
Query: 964 XXPKXGXSLXXXLTPPQXXXXPLP 893
P P P+P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIP 1046
Score = 26.6 bits (56), Expect = 7.6
Identities = 16/70 (22%), Positives = 18/70 (25%)
Frame = -3
Query: 1166 PPPXXPPXXXSRXXPXXXPPRPXXXPXXGGXXXRTPPXXXPXTXLXXXPPRPRXXXPXPP 987
P P P P P P PP P + + P P PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 986 XXXAXPXXXP 957
A P P
Sbjct: 1194 PSEAPPVPKP 1203
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Frame = -3
Query: 1166 PPPXXPPXXXSRXXPXXXPPRPXXXPXXGGXXXRT--PPXXXPXTXLXXXPPRPRXXXPX 993
PPP PP + P PPRP T PP P + + P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312
Query: 992 PP 987
PP
Sbjct: 313 PP 314
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/72 (23%), Positives = 19/72 (26%)
Frame = -3
Query: 1184 TTDXSPPPPXXPPXXXSRXXPXXXPPRPXXXPXXGGXXXRTPPXXXPXTXLXXXPPRPRX 1005
+T P PP PP P P P P P + PP P
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472
Query: 1004 XXPXPPXXXAXP 969
PP P
Sbjct: 473 APAPPPAPAPAP 484
Score = 27.5 bits (58), Expect = 4.3
Identities = 28/125 (22%), Positives = 34/125 (27%), Gaps = 4/125 (3%)
Frame = -1
Query: 1255 PPRSXXPXAAXXPXHXRHXLXXXTXPTXPXPHXXXRRVRXP----AGXXXVPPXDPXXXX 1088
PPRS + P R + P P P R P + P P
Sbjct: 342 PPRSNAAGSIPLPPQGR------SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395
Query: 1087 XGXXXSXAPPXHXXPSPXXXXILRXPAAXPPXXPALXPXPPXXPKXGXSLXXXLTPPQXX 908
G PP + P+ P P+L P P G L P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 907 XXPLP 893
PLP
Sbjct: 456 APPLP 460
Score = 27.1 bits (57), Expect = 5.7
Identities = 20/81 (24%), Positives = 21/81 (25%)
Frame = -3
Query: 1199 PXXXXTTDXSPPPPXXPPXXXSRXXPXXXPPRPXXXPXXGGXXXRTPPXXXPXTXLXXXP 1020
P + S PP PP P P P P PP P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP------SAPIAP 457
Query: 1019 PRPRXXXPXPPXXXAXPXXXP 957
P P PP A P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPP 478
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = +1
Query: 958 GXXXGXAXXXGGXGXXXRGRGGXXXKXVXGXXXGGVRXXXPPXXGXXXGRGGXXXG 1125
G G GG G GRGG G GG R G GRGG G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGG-----ARGGGRGGARGGRGGRGGARGGRGGSSGG 63
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -3
Query: 1169 PPPPXXPPXXXSRXXPXXXPPRP 1101
PPPP PP P PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,983
Number of Sequences: 5004
Number of extensions: 14173
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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