Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G06
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    69   1e-12
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    67   4e-12
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    27   4.8  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   6.3  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    26   8.4  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   8.4  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = +3

Query: 204 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVI 383
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 384 YTRA 395
           YTRA
Sbjct: 81  YTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 30/63 (47%), Positives = 47/63 (74%)
 Frame = +3

Query: 204 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVI 383
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH  Q I
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 384 YTR 392
           YTR
Sbjct: 81  YTR 83


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 65  PPKKDAKASAKQPQKTQKKKEGSRWRQSQEEEVVQRK 175
           P K+ + AS K     Q+++    W++ ++EE+ ++K
Sbjct: 35  PQKELSDASVKSSYVDQEQQAYENWKKQEQEEINRKK 71


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 368 MLDYLFDETFFPKLDECSSR 309
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 340 FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 176
           F  S M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  N +  
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262

Query: 175 FPL 167
           +P+
Sbjct: 263 YPI 265


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = -2

Query: 427 IVYATGSSPLVARV*ITCP*CWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYC 248
           I+Y T ++P++  + +T   CW   L  P  L ++  L    P   + SD    ++    
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP--LCTIVTL----PVENHSSDAILTLLYNSV 313

Query: 247 GTSLYSFSYVGLSNNTWLFNLSRTF 173
             S +SF +    ++  LF  SR F
Sbjct: 314 KESYHSFKHAMSISSIRLFLFSRLF 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,408
Number of Sequences: 5004
Number of extensions: 48785
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)