Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G06
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   111   5e-25
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    36   0.052
Z93388-7|CAB07654.1|  141|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AC024696-7|AAK84513.1|  141|Caenorhabditis elegans Histone prote...    30   2.6  
AC024696-6|AAK84507.1|  141|Caenorhabditis elegans Histone prote...    30   2.6  
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    29   6.0  
U97017-3|AAB52360.1|  199|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U97017-2|AAB52359.1|  281|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  111 bits (268), Expect = 5e-25
 Identities = 54/76 (71%), Positives = 62/76 (81%)
 Frame = +3

Query: 189 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 368
           LNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV H
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99

Query: 369 HGQVIYTRATKGDDPV 416
           HGQV+YTRATK  D +
Sbjct: 100 HGQVVYTRATKEADVI 115


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +2

Query: 71  KKDAKASAKQPQKTQKKKEGSRWRQSQEEEVVQRKSS*QVEQ 196
           KK++K+  K P+KT  K+E       +EEEVV++K S ++ +
Sbjct: 347 KKNSKSPKKTPKKTAVKEESEESSGDEEEEVVKKKKSSKINK 388



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +2

Query: 68  PKKDAKASAKQPQKTQKKKEGSRWRQSQEEEVVQRKSS*QVEQP 199
           PKK  K   K  +K+  K+E       +EEE  +  +    E P
Sbjct: 617 PKKKGKTPRKSSKKSAAKEESEESSDDEEEEQAEETNGSHTESP 660


>Z93388-7|CAB07654.1|  141|Caenorhabditis elegans Hypothetical
           protein T10C6.11 protein.
          Length = 141

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 38  RFVFPIQRCPPKKDAKASAKQPQKTQKKKEGSRWRQSQEE 157
           R V  I+  PPK  AK + K  +   K K+G + R +++E
Sbjct: 12  RPVQSIEMAPPKPSAKGAKKAAKTVTKPKDGKKRRHARKE 51


>AC024696-7|AAK84513.1|  141|Caenorhabditis elegans Histone protein
           54 protein.
          Length = 141

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 38  RFVFPIQRCPPKKDAKASAKQPQKTQKKKEGSRWRQSQEE 157
           R V  I+  PPK  AK + K  +   K K+G + R +++E
Sbjct: 12  RPVQSIEMAPPKPSAKGAKKAAKTVTKPKDGKKRRHARKE 51


>AC024696-6|AAK84507.1|  141|Caenorhabditis elegans Histone protein
           52 protein.
          Length = 141

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 38  RFVFPIQRCPPKKDAKASAKQPQKTQKKKEGSRWRQSQEE 157
           R V  I+  PPK  AK + K  +   K K+G + R +++E
Sbjct: 12  RPVQSIEMAPPKPSAKGAKKAAKTVTKPKDGKKRRHARKE 51


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 71  KKDAKASAKQPQKTQKKKEGSRWRQSQEEEVVQRKSS*QVEQP 199
           KK+ K   K+ +K ++KKE  +  + +EE+  ++K   +  +P
Sbjct: 176 KKEEKKEEKKEEKKEEKKEEKKEEEKKEEKKEEKKEDEKKVEP 218


>U97017-3|AAB52360.1|  199|Caenorhabditis elegans Hypothetical
           protein F47B3.5 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 71  KKDAKASAKQPQKTQK-KKEGSRWRQSQEEEVVQRKSS*QVEQP 199
           K D  A +K+ +K +K K EGS+  +S+++E  ++    + E P
Sbjct: 4   KPDEPAKSKKSEKKEKSKNEGSKKEESKDKEKSKKSEDKKSEDP 47


>U97017-2|AAB52359.1|  281|Caenorhabditis elegans Hypothetical
           protein F47B3.4 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 71  KKDAKASAKQPQKTQK-KKEGSRWRQSQEEEVVQRKSS*QVEQP 199
           K D  A +K+ +K +K K EGS+  +S+++E  ++    + E P
Sbjct: 86  KPDEPAKSKKSEKKEKSKNEGSKKEESKDKEKSKKSEDKKSEDP 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,970
Number of Sequences: 27780
Number of extensions: 313251
Number of successful extensions: 1355
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)