Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G06
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           93   2e-19
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    91   7e-19
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            91   7e-19
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            85   8e-17
At4g27630.1 68417.m03971 expressed protein                             30   2.4  
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin...    29   3.2  
At1g11060.1 68414.m01267 expressed protein                             29   4.2  
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic...    28   7.3  
At2g15270.1 68415.m01741 expressed protein                             28   7.3  
At1g15840.1 68414.m01901 expressed protein                             28   7.3  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    28   9.7  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/72 (58%), Positives = 55/72 (76%)
 Frame = +3

Query: 189 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 368
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLARRA+ EL  KG I+ V  H
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96

Query: 369 HGQVIYTRATKG 404
             Q IYTRAT G
Sbjct: 97  SSQQIYTRATHG 108


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 40/70 (57%), Positives = 55/70 (78%)
 Frame = +3

Query: 189 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 368
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  KG+I+ V  H
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96

Query: 369 HGQVIYTRAT 398
             Q IYTRAT
Sbjct: 97  SSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 41/70 (58%), Positives = 55/70 (78%)
 Frame = +3

Query: 189 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 368
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  KGLI+ V  H
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96

Query: 369 HGQVIYTRAT 398
             Q IYTRAT
Sbjct: 97  SSQQIYTRAT 106


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 38/70 (54%), Positives = 53/70 (75%)
 Frame = +3

Query: 189 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 368
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLAR+A+ +L  KG I+ V  H
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112

Query: 369 HGQVIYTRAT 398
             Q I TRAT
Sbjct: 113 SSQQINTRAT 122


>At4g27630.1 68417.m03971 expressed protein
          Length = 348

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 382 ITCP*CWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGL 212
           I  P CWTT L  PF L    ++     R   +  T   V+S +   +L  +SY+ L
Sbjct: 4   ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59


>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 177

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 68  PKKDAKASAKQPQKTQKKKEGSRWRQSQEEEVVQRKSS*QVEQP 199
           PK++ K   + P+K ++KKEG   ++ ++++  Q +    V  P
Sbjct: 98  PKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPP 141


>At1g11060.1 68414.m01267 expressed protein 
          Length = 930

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 41  FVFPIQRCPPKKDAKASAKQPQKTQKKKEGSRWRQSQEEEVVQRKSS 181
           F F ++   P K A  S  Q +   +KK+G  ++QS++E + Q  SS
Sbjct: 614 FAFDLEDYKPSKWAVVSVNQKKSRAQKKKGC-YKQSKDESLYQLFSS 659


>At2g37980.1 68415.m04662 expressed protein similar to axi 1
           [Nicotiana tabacum] GI:559921; contains Pfam profile
           PF03138: Plant protein family
          Length = 638

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 68  PKKDAKASAKQPQKTQKKKEGSRWRQS 148
           P+ D   +  QP++  K +E  RWR+S
Sbjct: 609 PQPDCICNKSQPEQLLKSRESDRWRKS 635


>At2g15270.1 68415.m01741 expressed protein
          Length = 194

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 56  QRCPPKKDAKASAKQPQKTQKKKEGSRWRQSQEEEVVQ 169
           Q+   +K +K   K+ +K QKK+E  +   + EEEV Q
Sbjct: 120 QKAAEEKTSKKRLKRQKKKQKKQEKKQKPNTTEEEVKQ 157


>At1g15840.1 68414.m01901 expressed protein
          Length = 126

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/66 (30%), Positives = 24/66 (36%)
 Frame = -1

Query: 896 GXRXXGRXDGGGXXGSRXXGNGXEGGQKRQTALVPXGVWADFIKAGKKRXXXXPPGPXXI 717
           G    G   GGG  G++  G+G  GG      L   G   D  K G +R      G    
Sbjct: 46  GEGTSGEGGGGGGDGTKGGGDGISGG-GHGDGLGCSGGGGDGTKGGGRRGDGLGRGLGRG 104

Query: 716 KGXXGW 699
            G  GW
Sbjct: 105 GGRGGW 110


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +3

Query: 192 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 332
           +++ + +KPT +K   E     L++PA +S+R+K++ + A  + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,281,621
Number of Sequences: 28952
Number of extensions: 295144
Number of successful extensions: 1132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)