Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G05
         (868 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    30   2.3  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   4.0  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   4.0  
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    29   5.3  
At4g16090.1 68417.m02439 hypothetical protein contains Pfam prof...    28   7.0  
At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein ...    28   7.0  
At4g31877.1 68417.m04530 expressed protein                             28   9.3  

>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 560  GQVETLAVGSVEAR--GSKSVDEHASVDPFSHPARSPHENIEV 438
            G+ ET++ G V+A   GS  V+E  S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 363 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 488
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 363 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 488
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 599 AVNEEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFS-HPARSPHENIEVLSVVE 423
           AVN   G D +R  ++  +  G  ++    + DE  +  P S     + HE+ E    VE
Sbjct: 197 AVNNNFGSDPIRRPEIREIKTG--KSLRVYNDDEPLAYSPVSLAQINTIHESDEN-DDVE 253

Query: 422 DSEDFDGFF 396
           D +DF GFF
Sbjct: 254 DDDDFPGFF 262


>At4g16090.1 68417.m02439 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 251

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 738 IPKRCYVLFHGRTSTLNTYMYYLHMNYPFWMTDXXI 845
           +P RC+ L    +ST N Y+ Y  +NY   M D  +
Sbjct: 17  LPLRCHTLRMFSSSTTNPYLLYRVINYGSSMDDIHV 52


>At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein
           contains DHHC zinc finger domain PF01529
          Length = 307

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 655 VLWKYYGITVTDDNLVVIDWRKGVRRSLSQNDVMS 759
           +LW Y+ +  TD  +V  +WR        ++D ++
Sbjct: 74  LLWSYFSVVFTDPGVVPPNWRPSTDEERGESDPLN 108


>At4g31877.1 68417.m04530 expressed protein
          Length = 102

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -1

Query: 400 SSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFM----YLSQLFSML 272
           +S+  SL++   S   S+P+ + S NC+  S F+    ++SQ + ML
Sbjct: 6   ASLACSLLYLSDSGSDSVPVTFSSSNCVPISHFLSHVFFISQRYEML 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,092,693
Number of Sequences: 28952
Number of extensions: 337576
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)