Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_G03
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.010
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.055
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.010
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +1
Query: 631 PXPPPPPXXGGXPXPPXXXXXXXXXGPPPXP 723
P PPP P GG P PP PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 32.7 bits (71), Expect = 0.073
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 638 PXPPPXXGXXPPPPXXXXXXXXXAPPPXPXXP 733
P P P G PPPP PPP P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.90
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 628 PPXPPPPPXXGGXPXPP 678
PP PPPPP G PP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777
Score = 29.1 bits (62), Expect = 0.90
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 628 PPXPPPPPXXGGXPXPP 678
PP PPPP G P PP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Frame = +2
Query: 638 PXPPPXXG-XXPPPPXXXXXXXXXAPPPXPXXP 733
P PPP PPPP PPP P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +2
Query: 629 PRXPXPPPXXGXXPPPPXXXXXXXXXAPPPXPXXPXKXPP 748
P P P P PP PPP P PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.1 bits (72), Expect = 0.055
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = +2
Query: 629 PRXPXPPPXXGXXPPPPXXXXXXXXXAPPP-XPXXPXKXPP 748
PR PPP PP P PPP P P K PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/61 (24%), Positives = 15/61 (24%)
Frame = +2
Query: 647 PPXXGXXPPPPXXXXXXXXXAPPPXPXXPXKXPPXXXXXXXPXXPXXXXXXXPXXXXXXP 826
PP PP P APP P P P P P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 827 P 829
P
Sbjct: 204 P 204
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +2
Query: 629 PRXPXPPPXXGXXPPPPXXXXXXXXXAPPPXPXXPXKXPPXXXXXXXPXXP 781
P+ PP PPPP APP P PP P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 631 PXPPPPPXXGGXPXPPXXXXXXXXXGPPPXP 723
P PPPPP PP PPP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = +2
Query: 638 PXPPPXXGXXPPPPXXXXXXXXXAPPP 718
P PP PPPP PPP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -3
Query: 747 GGXXXGXXGXGGGAXXXXXXXXXGGGGXXPXXGGGXGXRG 628
GG G G GGG G G GG G RG
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -3
Query: 747 GGXXXGXXGXGGGAXXXXXXXXXGGGGXXPXXGGGXGXRG 628
GG G G GG G GG GG G RG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 747 GGXXXGXXGXGGGAXXXXXXXXXGGGGXXPXXGGGXGXRG 628
GG G G GGG GGG GGG G G
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPG-GFGGGPGGHG 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,942
Number of Sequences: 5004
Number of extensions: 38214
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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