Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G03
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.94 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 628  PPXPPPPPXXG 660
            PP PPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 631  PXPPPPPXXGG 663
            P PPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 631 PXPPPPPXXGG 663
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 631 PXPPPPPXXGGXP 669
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 628 PPXPPPPPXXGG 663
           P  PPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 628 PPXPPPPPXXGGXPXPP 678
           PP P   P  GG P  P
Sbjct: 39  PPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,682
Number of Sequences: 438
Number of extensions: 5130
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)