Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_G02
         (870 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76010.1 68414.m08825 expressed protein                             28   7.1  
At1g72110.1 68414.m08335 expressed protein                             28   7.1  
At1g49670.1 68414.m05570 ARP protein (REF) identical to ARP prot...    28   9.3  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   9.3  

>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 172 DSGNGYE-PIDNRPYIVNPPKDYNPNGNG-YE-PIDNGAYYVDRPQG-RPYFKPTPFPGA 339
           D G GY+ P ++R Y      D  P G G Y+ P   G Y  D PQG R Y  P   P  
Sbjct: 220 DGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRGGY--DGPQGRRGYDGP---PQG 274

Query: 340 RGG 348
           RGG
Sbjct: 275 RGG 277


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 421 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 326
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g49670.1 68414.m05570 ARP protein (REF) identical to ARP protein
           GB:CAA89858 GI:886434 from [Arabidopsis thaliana];
           contains Pfam profile PF00107: oxidoreductase,
           zinc-binding dehydrogenase family
          Length = 629

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/95 (24%), Positives = 42/95 (44%)
 Frame = +2

Query: 92  EILHDFRPSLCWLWPTLKTPLG*WKTPTQETATNLLTTARTSLILPKTTTLMETATNLST 271
           E++ D + +   LW T +  L  W TP +ET   + +++R      K +T +E   +   
Sbjct: 231 ELITDEKKAGACLWITKRRGLEYWPTPMEETKYLVGSSSRKRPSF-KVSTKIEFPQSFEK 289

Query: 272 TVHITWTVPKADLTSSLPLSLVLAVGSKEYLRKLI 376
            +  T +      T  +   L L +G  + L K+I
Sbjct: 290 MIVHTLSHKFRSATRIVRAPLQLPIGPHQVLLKII 324


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 223 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 333
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,831
Number of Sequences: 28952
Number of extensions: 253907
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)