Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F24
         (919 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0216 - 15942379-15942852,15942956-15943033                       29   5.2  
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160...    29   5.2  
11_04_0009 - 12132781-12133272                                         28   9.0  
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699...    28   9.0  

>10_08_0216 - 15942379-15942852,15942956-15943033
          Length = 183

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/50 (30%), Positives = 17/50 (34%)
 Frame = -3

Query: 668 GXGPNAXXGVXVXXWGPXDXPXRGXPXXPXTXXGXGXGXGGXXGXGXGGF 519
           G G     G     +GP   P  G    P    G     GG  G G GG+
Sbjct: 40  GGGGGGGGGGYYGPYGPYYGPYYGPYYGPYASGGAAASGGGGGGGGGGGY 89


>02_04_0567 -
           23914330-23914461,23915016-23915136,23915954-23916048,
           23916131-23916301,23917291-23917380,23917636-23918139
          Length = 370

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 508 FLIKNPPXPXPXXPPXPXPXP 570
           FL   PP P P  PP P P P
Sbjct: 35  FLCPPPPPPPPPPPPPPPPPP 55


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 218 RSSTWAREQRWSCSKPAPERRRRIGSLR 135
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>05_07_0200 -
           28368890-28369021,28369169-28369303,28369918-28369947,
           28370019-28370093,28370222-28370333,28370440-28370621,
           28370723-28370854,28372193-28373479
          Length = 694

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 511 LIKNPPXPXPXXPPXPXPXP 570
           L K PP P P  PP P P P
Sbjct: 301 LSKLPPIPPPPPPPPPPPMP 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,783,358
Number of Sequences: 37544
Number of extensions: 358640
Number of successful extensions: 2048
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)