Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F24
         (919 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   7.0  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
 Frame = +3

Query: 570 PXGPGGXGXPPXGXVXXPPXXNXXPXXGVXP---XPPXXXXXGXXLXFXXGXXG--GPPX 734
           P  PGG G PP G    PP  +  P  G  P    PP     G  +    G     GP  
Sbjct: 215 PGRPGGPGMPPGGPPPFPPTSD--PNMGHHPPISGPPTTSMSGPPIPVHHGMPPQYGPGR 272

Query: 735 XLXXAPXSPPGXXP 776
                P +PPG  P
Sbjct: 273 RDMPPPGAPPGMLP 286


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 520 NPPXPXPXXPPXPXPXP 570
           NPP P P  PP P P P
Sbjct: 91  NPPYPPPPYPPYPPPPP 107



 Score = 29.1 bits (62), Expect = 5.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 520 NPPXPXPXXPPXPXPXP 570
           NPP P P  PP P P P
Sbjct: 153 NPPYPPPLYPPPPNPPP 169


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +1

Query: 517 KNPPXPXPXXPPXPXPXPXXVXGXXGXPLXGXSLGP 624
           + PP P P   P P P P    G  G P      GP
Sbjct: 27  ETPPPPPPYEAPPPPPGPPGPDGPPGFPGPQGPNGP 62


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
 Frame = +1

Query: 523 PPXPXPXXPPXPXP--XPXXVXGXXGXPL---XGXSLG-PXXLTXTPWXAXGPXPXXXXG 684
           PP P P  PP P P   P    G  G P     G S G P      P    G  P    G
Sbjct: 698 PPPPQPSTPPPPPPSTPPVQQSGAPGSPAGSPSGTSAGNPQQQPPPPGQLPGQQPGQAGG 757

Query: 685 R 687
           R
Sbjct: 758 R 758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,073,378
Number of Sequences: 59808
Number of extensions: 358671
Number of successful extensions: 1119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)