Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F24
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +3

Query: 579 PGGXGXPPXGXVXXPPXXNXXPXXGVXPXP 668
           P G   PP      PP  N     G+ P P
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPPLP 433


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/41 (26%), Positives = 14/41 (34%)
 Frame = +1

Query: 547  PPXPXPXPXXVXGXXGXPLXGXSLGPXXLTXTPWXAXGPXP 669
            P  P   P  + G  G  +     G   L  TP+    P P
Sbjct: 1128 PQKPFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPPP 1168


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -2

Query: 240 PIFSIFLKIFHLGSGAALVMLKASTRAKTKDRIFAKFIVSLCKFKP 103
           P+F+I+  +F   +     ++   +  K +  +FAKF    C  +P
Sbjct: 310 PLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLACAAEP 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,362
Number of Sequences: 438
Number of extensions: 4746
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)