Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F24
         (919 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51290.1 68416.m05614 proline-rich family protein                   29   3.3  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   5.7  
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ...    29   5.7  
At1g54215.1 68414.m06180 proline-rich family protein contains pr...    28   7.5  

>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 505 IFLIKNPPXPXPXXPPXPXPXP 570
           + L  NPP P P  PP P P P
Sbjct: 62  LHLHHNPPSPSPPPPPPPRPPP 83


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +1

Query: 523 PPXPXPXXPPXPXPXPXXVXGXXGXPLXGXSLGPXXLTXTPWXAXGPXP 669
           PP P P  PP P P P         P    S  P   +  P+    P P
Sbjct: 382 PPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPP 430


>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
           PF03005: Arabidopsis proteins of unknown function
          Length = 451

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 505 IFLIKNPPXPXPXXPPXPXPXP 570
           + ++  PP P P  PP P P P
Sbjct: 58  VVVVDEPPPPPPTSPPPPSPPP 79


>At1g54215.1 68414.m06180 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 169

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 487 IENQXNIFLIKNPPXPXPXXPPXPXPXP 570
           +++Q      ++PP P P  PP P P P
Sbjct: 30  VQSQDPPLFPQSPPPPPPPPPPPPPPPP 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,082,613
Number of Sequences: 28952
Number of extensions: 268302
Number of successful extensions: 1119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)