Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F23
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   139   6e-34
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.055

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  139 bits (336), Expect = 6e-34
 Identities = 60/82 (73%), Positives = 70/82 (85%)
 Frame = +3

Query: 75  MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 254
           M LA+DLL+PS  SE RKHKLK+LV  P S+FMDVKCPGC+ ITTVFSHAQ VV+C  C+
Sbjct: 1   MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCA 60

Query: 255 TILCQPTGGRARLTEGCSFRRK 320
           ++LCQPTGG+ARL EGCSFRRK
Sbjct: 61  SVLCQPTGGKARLMEGCSFRRK 82


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +3

Query: 570 PXXPPXPXXGGXXPPPKKKKXWXXXXPPPPXIP 668
           P  PP P  GG  PPP          PPPP  P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/46 (28%), Positives = 14/46 (30%)
 Frame = +2

Query: 530 PPXXXXPXXXXXKXPXPXXPXXGGXXXPPKKKKXLXXXXPPPPXNP 667
           PP    P       P P      G   PP     +    PPPP  P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,478
Number of Sequences: 5004
Number of extensions: 36088
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)