Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_F23
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF101312-3|AAC69219.1| 83|Caenorhabditis elegans Ribosomal pro... 149 3e-36
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.64
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.64
U23517-8|AAM98041.1| 605|Caenorhabditis elegans A kinase anchor... 31 1.5
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor... 31 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.4
AC024200-2|AAF35997.2| 189|Caenorhabditis elegans Hypothetical ... 29 4.5
>AF101312-3|AAC69219.1| 83|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 27 protein.
Length = 83
Score = 149 bits (361), Expect = 3e-36
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 75 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 254
MPLA+DLLHP P E R HKLKRLV HPNSYFMDVKC GC+KI+TVFSHA VVVC GC+
Sbjct: 1 MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCN 60
Query: 255 TILCQPTGGRARLTEGCSFRRKQ 323
T+LCQPT G+A+LTEGCSFR+KQ
Sbjct: 61 TVLCQPTRGKAKLTEGCSFRKKQ 83
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.64
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 570 PXXPPXPXXGGXXPPPKKKKXWXXXXPPPP 659
P PP P PPP W PPPP
Sbjct: 275 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.64
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 570 PXXPPXPXXGGXXPPPKKKKXWXXXXPPPP 659
P PP P PPP W PPPP
Sbjct: 285 PPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314
>U23517-8|AAM98041.1| 605|Caenorhabditis elegans A kinase anchor
protein protein1, isoform c protein.
Length = 605
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 105 SPASERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 266
+P ERR + + + + Y++ D +CP C T F+ R C C +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571
>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
protein protein1, isoform b protein.
Length = 1284
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 105 SPASERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 266
+P ERR + + + + Y++ D +CP C T F+ R C C +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 570 PXXPPXPXXGGXXPPPKKKKXWXXXXPPPPXIP 668
P PP P G PPP PPPP P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 579 PPXPXXGGXXPPPKKKKXWXXXXPPPPXIPRXKXXP 686
PP P GG PPP PPP P P
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 570 PXXPPXPXXGGXXPPPKKKKXWXXXXPPPPXIP 668
P PP P G PPP PPPP P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 579 PPXPXXGGXXPPPKKKKXWXXXXPPPPXIPRXKXXP 686
PP P GG PPP PPP P P
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 570 PXXPPXPXXGGXXPPPKKKKXWXXXXPPPPXIP 668
P PP P G PPP PPPP P
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 579 PPXPXXGGXXPPPKKKKXWXXXXPPPPXIPRXKXXP 686
PP P GG PPP PPP P P
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 579 PPXPXXGGXXPPPKKKKXWXXXXPPPPXIPR 671
PP P GG PPP+ PPPP PR
Sbjct: 280 PPPPPAGGSPPPPR------AGSPPPPPPPR 304
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 579 PPXPXXGGXXPPPKKKKXWXXXXPPPPXIPR 671
PP P GG PPP+ PPPP PR
Sbjct: 301 PPPPPAGGSPPPPR------AGSPPPPPPPR 325
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 579 PPXPXXGGXXPPPKKKKXWXXXXPPPPXIPR 671
PP P GG PPP+ PPPP PR
Sbjct: 286 PPPPPAGGSPPPPR------AGSPPPPPPPR 310
>AC024200-2|AAF35997.2| 189|Caenorhabditis elegans Hypothetical
protein Y71F9AL.10 protein.
Length = 189
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 96 LHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVC 242
LH +P H +R VP + MD+KCP C+K+ +V+C
Sbjct: 81 LHATPGRLHGHHS-RRSVP---VFMMDMKCPVCHKVVPSDDADIHLVMC 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,650
Number of Sequences: 27780
Number of extensions: 252235
Number of successful extensions: 1041
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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