Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_F22
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 49 4e-06
07_03_1106 + 24017601-24019955 31 1.1
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 30 2.0
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294... 29 3.5
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 29 4.6
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 29 4.6
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951... 28 8.1
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/86 (32%), Positives = 41/86 (47%)
Frame = +2
Query: 149 DGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLXSNDKIRC 328
+GY +L F E ++ E + + FST + +K+ +F S + I
Sbjct: 18 NGYLVLGSFSSAEEVRAMRDRMAELVDGFDGAGD--VFSTKDHRQVKNDFFFKSAENISF 75
Query: 329 FFEEGAIDADGNLTVEPEISLNKVGH 406
FFEE A DG L E+S+NKVGH
Sbjct: 76 FFEEKAFGDDGCLKQAKELSINKVGH 101
>07_03_1106 + 24017601-24019955
Length = 784
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 271 CCRERCSLLYVWQVFSEFQSSGF--DFITFRNMKKVF 167
CCR R QVF E ++SGF D +TF ++ V+
Sbjct: 252 CCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVY 288
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 143 ITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLXSNDK- 319
+ D +++L+D AE +E + L+ T + TF + + +K L S+D
Sbjct: 237 VKDVFSLLKDC--AAEVNENSSVELQITYGVL-FSLVVTFVSDALSTSHEKPSLSSSDSS 293
Query: 320 IRCFFEEGAIDADGNLTVEPEISLNKVGHALHLL 421
R F E + +D NLT+E + + ++ A+HL+
Sbjct: 294 FRRDFHELVMRSDNNLTIEGFVGVVRLAWAVHLM 327
>05_05_0192 -
23128460-23128502,23129130-23129216,23129299-23129443,
23130812-23130872,23131046-23131164,23131320-23131374
Length = 169
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 149 DGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERA-TFSTTEKTHLKDKYFLXSNDKIR 325
+GY +L F + +E+KA + + FST + +K+ +F S + I
Sbjct: 18 NGYLVLGSF---SSAEEVKAMRDRMAVLIDGFDGAGDVFSTKDHRQVKNDFFFKSAENIS 74
Query: 326 CFFEEG 343
FFE+G
Sbjct: 75 FFFEDG 80
>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -2
Query: 594 GVGSVYRYVAS*CATTSEPMPGFLKIYMLCTTAGSIK--PSSLQMLFTRSLYV*HLKI 427
GVG+ +YV S + +P L+ Y++ GS+ ++ MLFTR + L++
Sbjct: 1281 GVGNEVKYVISKVWVQCKGLPSELREYLIICAVGSLLGITKAVDMLFTRRYDIARLQV 1338
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 377 PEISLNKVGHALHLLHPIFRCYTYSERVK 463
PE ++ ++GH HLL +R YT S RVK
Sbjct: 718 PE-TITRLGHMRHLLSGRYRYYTRSHRVK 745
>08_02_1160 -
24793708-24794796,24794888-24794951,24795028-24795146,
24795496-24795612,24796365-24796406,24797342-24797506,
24797806-24797898,24798190-24798291,24798360-24798501,
24799301-24799651,24799741-24799839,24800019-24800230,
24800394-24800429
Length = 876
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 152 GYAILEDFLHVAECDEIKAAGLEF--TENLPDIEERATFSTTEKTHLKD 292
G A +E A+CDE+ +AG+E+ EN P E A + + L+D
Sbjct: 693 GSAPVEQPTGFADCDEVTSAGIEYHSLENSPLTERPADAAGVQYKMLED 741
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,875,251
Number of Sequences: 37544
Number of extensions: 440968
Number of successful extensions: 1049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -