Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F22
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)                      58   9e-09
SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086)                    31   1.5  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   30   2.7  
SB_35354| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)        29   4.7  
SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)            28   8.2  

>SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)
          Length = 391

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 29/77 (37%), Positives = 42/77 (54%)
 Frame = +2

Query: 131 KSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLXS 310
           +SQ  +DGY ++E+FL + E  E++ A     ++L   +   +   T    + D YFL S
Sbjct: 312 QSQFASDGYVVIENFLSLDEVQELREAMRNIVDDLDLSQNPLSVFKTGDDQVGDDYFLTS 371

Query: 311 NDKIRCFFEEGAIDADG 361
            DKIR F EEGA D  G
Sbjct: 372 GDKIRPFMEEGAFDKQG 388


>SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086)
          Length = 809

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -3

Query: 761 VDNPLQVYHRLKPRHCLHLXCG---SNVCALLTCESLETATDSRFELWLLQELSRSQLGE 591
           V+N + V+H LKP H LH   G    NV +LL  E++  A  +    W L E  R+ + +
Sbjct: 718 VENTVWVHHSLKPLHHLHSLRGLGHMNVGSLLQAEAVFRADAA----WCLAEYYRNDMSQ 773


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 560 DVQPLRNQCQGS*KYTCFAPQPAQ*SQALCKCSSRVHYTCN 438
           D Q     C    +Y C  P+P     + C   SR+ Y CN
Sbjct: 501 DCQDQFKCCFDGCRYNCILPKPDPAEHSTCPVMSRIPYMCN 541


>SB_35354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  HYRESLRFESCVATQYRRYLNSFCFCKFIASIMH 121
           +Y+ +++ + C AT Y  Y +  C C+++    H
Sbjct: 38  NYKRAMKRKPCCATLYHLYFDDVCLCEWVPYSTH 71


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 474  KSLALLSRLWCKACIFLRTLALVPKWLHIKTQHICTQNQLPQLASG*LLKKPQFKTAVC 650
            K++ LL +      +  R   LV KW  +   HI T   +    +G  +  PQ   A+C
Sbjct: 2047 KTINLLRKKTNNESLAKRAKKLVKKWQSLVINHIQTTRSVDSPLNGSRISSPQINGAIC 2105


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 701 CGSNVCALLTCE----SLETATDSRFELWLLQELSRSQLGELVLCTDMLRLD 558
           C S  CALLTCE    +LETA   R  +       + +L  +V+   +LR D
Sbjct: 629 CFSQYCALLTCENHVVALETAKSLRSFVNFGSSSLKEELFRVVILPSILRCD 680


>SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)
          Length = 560

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   FXTTHYRESLRFESCVATQYRRYLNSFCFCKFI 106
           F   +Y+ +++ + C AT Y  Y  + C C+++
Sbjct: 34  FLNFNYKRAMKRKPCCATSYHLYSVNVCLCEWV 66


>SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)
          Length = 779

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 47  SCVATQYRRYLNSFCFCKFIASIMHDSIKSQLITDGYAILEDFL 178
           S   +++RR L SFCF       +H   K++L  DG     +FL
Sbjct: 127 SVTMSEFRRVLESFCFPMTQEQFVHIMKKAKLNRDGSVNYLEFL 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,856,408
Number of Sequences: 59808
Number of extensions: 526255
Number of successful extensions: 1263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)