Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F20
         (1299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.36 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   7.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 1169 PXPXPPPPPPXXXXP 1213
            P P PPPPPP    P
Sbjct: 339  PKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 1045 PXPPXPPPXPPPXXAXP 1095
            P  P PPP PPP  + P
Sbjct: 338  PPKPAPPP-PPPSSSGP 353



 Score = 23.0 bits (47), Expect(2) = 0.77
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 908 PPPPXPPPP 934
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 21.0 bits (42), Expect(2) = 0.77
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 911 PPPXPPPPXXXPP 949
           P P PPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 1141 PXPPXXXXXPXPXPPPPPPXXPXPPXGXPXXXPS 1242
            P P      P    PP P   P PP G P   PS
Sbjct: 25   PSPHQSPQAPQRGSPPNPSQGP-PPGGPPGAPPS 57



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 1025 PPXXPXXPPPXXPPPXXPPXXP 1090
            PP     PPP  PP   P   P
Sbjct: 39   PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/33 (30%), Positives = 10/33 (30%)
 Frame = +3

Query: 993  PXPXXXXXXXXPXXXPXXXPPXXPPPPXPPXXP 1091
            P P        P       P   PPP  PP  P
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 908  PPPPXPPP 931
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 911  PPPXPPPP 934
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1174 PXPPPPPP 1197
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1173 PLPPPPPP 1196
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 1174 PXPPPPPP 1197
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 1173 PLPPPPPP 1196
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1173 PLPPPPP 1193
            PLPPPPP
Sbjct: 374  PLPPPPP 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.157    0.597 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,199
Number of Sequences: 438
Number of extensions: 12925
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44663436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)