Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F18
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.74 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 566 PGXXPPXPPPXTXXPPNPGHQPXXXPP 646
           PG  PP PPP    PP+   QP   PP
Sbjct: 6   PGNPPPPPPPPGFEPPS---QPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 578 PPXPPPXTXXPPNPGHQPXXXPPTP 652
           PP  PP    PP PG +P   PP P
Sbjct: 5   PPGNPPPP--PPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 557 PXTPGXXPPXPPPXTXXPPNPGHQPXXXPPTP 652
           P  PG  PP  PP    PP PG+       TP
Sbjct: 13  PPPPGFEPPSQPP---PPPPPGYVKKRKNKTP 41


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 566  PGXXPPXPPPXTXXPPNPGHQPXXXPPTP 652
            P   PP P P    PP P   P   PP P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPA--PSGAPPVP 1162



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 566  PGXXPPXPPPXTXXPPNPGHQPXXXPPTP 652
            P   PP P P    PP P   P   PP P
Sbjct: 1194 PSEAPPVPKPSVGVPPVP--PPSTAPPVP 1220



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 566  PGXXPPXPPPXTXXPPNPGHQPXXXPPTP 652
            P   PP P P    PP P   P   PP P
Sbjct: 1117 PSGAPPVPKPSVAAPPVP--VPSGAPPVP 1143



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +2

Query: 521  NPXTSXAQARXHPXTPGXXPPXPPPXTXXPPNPGHQPXXXPPTP 652
            +P    A+    P      PP P P    PP P   P   PP P
Sbjct: 1003 SPAAPLARVPPVPKLSSKAPPVPLPSADAPPIP--VPSTAPPVP 1044



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 557  PXTPGXXPPXPPPXTXXPPNPGHQPXXXPPTP 652
            P      PP P P    PP P   P   PP P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVP--PPSEAPPVP 1201


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +2

Query: 533  SXAQARXHPXTPGXXPPXPPPXTXXPPNPGHQPXXXPP 646
            S A  +    TP   P   PP    PP P   P   PP
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,062,196
Number of Sequences: 5004
Number of extensions: 8567
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)