Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F17
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178     33   0.41 
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    32   0.55 
03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.95 
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   1.7  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.2  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   5.1  

>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
          Length = 518

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -3

Query: 332 YSLLPTASTRERGRLEVRSALGTVHVICTVVDRFVAVSIRVVVFGRINDVRAVVNRFVAV 153
           ++++ ++  RE         +  +HV  T  +    V   + +  R+  ++ +  R + V
Sbjct: 133 HTIMKSSHLREIIERSADRRVEQLHVELTNPNVVDKVRFHLPILSRVIALQHLSLRQIVV 192

Query: 152 SLSVGHSQQSEDENHEE-FHFYMITSYHRRKILKLCPNLK 36
           S      QQ  +E  E  FHF  I SY  R ++  CPNL+
Sbjct: 193 SKMRFKPQQRFNELSEICFHFVSIESYMLRNVITRCPNLR 232


>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
            22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 227  AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 63
            A  I  +++G ++D     ++F+ +S       QS+DEN +  H  +  +YH +K
Sbjct: 985  ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 159 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 308
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +3

Query: 159 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 317
           Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   P P  GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 147 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 302
           QG  Y+P   R     PP+   P    Y P   G  Y  +PQG+PY  P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = +3

Query: 102 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDR 266
           F ++   A +A A     +G  P ++  +   PP     D  P+ + Y+P  +  YY D 
Sbjct: 16  FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74

Query: 267 PQGRPYFKPTPFPGARGG 320
           P    Y+ P P P   GG
Sbjct: 75  PPSPDYYDPPPSPYYGGG 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,978
Number of Sequences: 37544
Number of extensions: 255517
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)