Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F16
         (948 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   33   0.45 
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               31   1.8  
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   30   3.1  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   29   4.2  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   5.5  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   7.3  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   7.3  

>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 32.7 bits (71), Expect = 0.45
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           PP  GG +P     PPP PP     PP     G   +      PPPP
Sbjct: 355 PPPVGGAAPP----PPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPP 397



 Score = 29.1 bits (62), Expect = 5.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 836 LPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           + PP PP +   PP    G      S    PPPP
Sbjct: 285 IQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPP 318



 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 839 PPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPPXK 943
           PPP P      PP  RG            PPPP +
Sbjct: 287 PPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPAR 321


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
 Frame = +2

Query: 797  PPXXGGGSPXXXX-----LPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
            PP  GG +P          PPP PP     PP   G            PPPP
Sbjct: 934  PPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPP 985


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPP 877
           PP   GG+P     PPP PP     PP
Sbjct: 306 PPPPPGGAPPPPPPPPPPPPGDGGAPP 332



 Score = 28.3 bits (60), Expect = 9.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 246 PXGXSPPPPRXXPPPXG 296
           P G  PPPP   PPP G
Sbjct: 310 PGGAPPPPPPPPPPPPG 326


>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +2

Query: 794 YPPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           YPP  G G P     PPP P      PP     G         +  PP
Sbjct: 44  YPPSGGYGYPPAGGYPPPQPGYAGGPPPPGIAPGIGGPPPSGQYGAPP 91


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGG 892
           PP   GG+P     PPP PP     PP   GG
Sbjct: 203 PPGFPGGAP-----PPPPPPFGAPPPPALNGG 229


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 25/90 (27%), Positives = 27/90 (30%), Gaps = 8/90 (8%)
 Frame = +3

Query: 693 PPEKXXPPXGRPXXXGAXXGXXXXXX---KGGGKXXFTPXNXGXVPPXXXXXX-----PX 848
           PP       G P   GA  G         +GGG         G  PP           P 
Sbjct: 503 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQGWGQPPPG 562

Query: 849 XXPXRXPNPPKXGXGGXXXPFXXKXTPPPP 938
                 P PP  G GG   P   +  PPPP
Sbjct: 563 AGQGGGPPPPGAGQGGPPPPGAGQEGPPPP 592


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +2

Query: 821 PXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           P     PPP PP     PP     G          PPPP
Sbjct: 359 PPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPP 397



 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 839 PPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           PPP PP     PP     G          PPPP
Sbjct: 375 PPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPPP 407



 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 839 PPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           PPP P  K   PP    G           PPPP
Sbjct: 366 PPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPP 398


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           PP      P     PPP PP     PPQ               PPPP
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPP 413


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
 Frame = +3

Query: 798 PXNXGXVPPXXXXXXPXXXPX---RXPNPPKXGXGGXXXPFXXKXTPPPPK 941
           P      PP      P   P      P PP  G      P   K  PPPPK
Sbjct: 224 PSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPK 274


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
 Frame = +3

Query: 798 PXNXGXVPPXXXXXXPXXXPX---RXPNPPKXGXGGXXXPFXXKXTPPPPK 941
           P      PP      P   P      P PP  G      P   K  PPPPK
Sbjct: 136 PSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPK 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,496,307
Number of Sequences: 59808
Number of extensions: 288048
Number of successful extensions: 1902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)