BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP03_F_F16 (948 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.032 AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.032 AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.032 Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 33 0.30 Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.91 U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.91 AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 0.91 U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2 U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2 AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2 Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.6 Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.6 U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 31 1.6 AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 31 1.6 Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 4.9 Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 6.4 Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 29 6.4 Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 29 6.4 AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 29 6.4 AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 24 7.0 >AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform b protein. Length = 518 Score = 36.3 bits (80), Expect = 0.032 Identities = 16/49 (32%), Positives = 18/49 (36%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPPXK 943 PP GSP P PP PP GG + PPPP + Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 304 Score = 31.9 bits (69), Expect = 0.69 Identities = 18/49 (36%), Positives = 19/49 (38%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPPXK 943 PP GSP P PP PPQ GG A + PPP K Sbjct: 289 PPPPRAGSPPPPPPPRGSPPTGSLPPPQ-AGGSPPPAGTGSPPPPPRQK 336 Score = 30.7 bits (66), Expect = 1.6 Identities = 15/46 (32%), Positives = 16/46 (34%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPP 934 PP GSP P PP PP R G + PPP Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284 Score = 29.5 bits (63), Expect = 3.7 Identities = 14/45 (31%), Positives = 15/45 (33%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPP 931 PP GSP P PP PP R G + PP Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 308 >AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform c protein. Length = 539 Score = 36.3 bits (80), Expect = 0.032 Identities = 16/49 (32%), Positives = 18/49 (36%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPPXK 943 PP GSP P PP PP GG + PPPP + Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 325 Score = 31.9 bits (69), Expect = 0.69 Identities = 18/49 (36%), Positives = 19/49 (38%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPPXK 943 PP GSP P PP PPQ GG A + PPP K Sbjct: 310 PPPPRAGSPPPPPPPRGSPPTGSLPPPQ-AGGSPPPAGTGSPPPPPRQK 357 Score = 30.7 bits (66), Expect = 1.6 Identities = 15/46 (32%), Positives = 16/46 (34%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPP 934 PP GSP P PP PP R G + PPP Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305 Score = 29.5 bits (63), Expect = 3.7 Identities = 14/45 (31%), Positives = 15/45 (33%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPP 931 PP GSP P PP PP R G + PP Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 329 >AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform a protein. Length = 524 Score = 36.3 bits (80), Expect = 0.032 Identities = 16/49 (32%), Positives = 18/49 (36%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPPXK 943 PP GSP P PP PP GG + PPPP + Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 310 Score = 31.9 bits (69), Expect = 0.69 Identities = 18/49 (36%), Positives = 19/49 (38%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPPXK 943 PP GSP P PP PPQ GG A + PPP K Sbjct: 295 PPPPRAGSPPPPPPPRGSPPTGSLPPPQ-AGGSPPPAGTGSPPPPPRQK 342 Score = 30.7 bits (66), Expect = 1.6 Identities = 15/46 (32%), Positives = 16/46 (34%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPP 934 PP GSP P PP PP R G + PPP Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290 Score = 29.5 bits (63), Expect = 3.7 Identities = 14/45 (31%), Positives = 15/45 (33%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPP 931 PP GSP P PP PP R G + PP Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 314 >Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein E02A10.2 protein. Length = 385 Score = 33.1 bits (72), Expect = 0.30 Identities = 16/33 (48%), Positives = 16/33 (48%) Frame = -1 Query: 936 GGGGCXXXEXAXXXPPPLXWGGSXXXXGGXGGG 838 GGGGC A PPP GG GG GGG Sbjct: 44 GGGGCGGG-CAPPPPPPACGGGCGGGGGGCGGG 75 Score = 33.1 bits (72), Expect = 0.30 Identities = 16/33 (48%), Positives = 16/33 (48%) Frame = -1 Query: 936 GGGGCXXXEXAXXXPPPLXWGGSXXXXGGXGGG 838 GGGGC A PPP GG GG GGG Sbjct: 101 GGGGCGGG-CAPPPPPPACGGGCGGGGGGCGGG 132 >Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein C08B11.5 protein. Length = 388 Score = 31.5 bits (68), Expect = 0.91 Identities = 23/92 (25%), Positives = 25/92 (27%), Gaps = 3/92 (3%) Frame = +3 Query: 672 WXPXXPFPPEKXXPPXGRPXXXGAXXGXXXXXXKGGGKXXFTPXN---XGXVPPXXXXXX 842 W P P PP + P G P GG P G +PP Sbjct: 296 WPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY 355 Query: 843 PXXXPXRXPNPPKXGXGGXXXPFXXKXTPPPP 938 P P P PP PPPP Sbjct: 356 PSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 387 >U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding protein protein. Length = 398 Score = 31.5 bits (68), Expect = 0.91 Identities = 23/92 (25%), Positives = 25/92 (27%), Gaps = 3/92 (3%) Frame = +3 Query: 672 WXPXXPFPPEKXXPPXGRPXXXGAXXGXXXXXXKGGGKXXFTPXN---XGXVPPXXXXXX 842 W P P PP + P G P GG P G +PP Sbjct: 306 WPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY 365 Query: 843 PXXXPXRXPNPPKXGXGGXXXPFXXKXTPPPP 938 P P P PP PPPP Sbjct: 366 PSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPP 397 >AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical protein F59E12.9 protein. Length = 1621 Score = 31.5 bits (68), Expect = 0.91 Identities = 14/37 (37%), Positives = 15/37 (40%) Frame = +2 Query: 767 PKRXXKXXFYPPXXGGGSPXXXXLPPPXPPXKXXEPP 877 P R PP GG P +PPP PP PP Sbjct: 1575 PPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPP 1611 Score = 28.7 bits (61), Expect = 6.4 Identities = 15/47 (31%), Positives = 16/47 (34%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG + PPP PP GG PPPP Sbjct: 1560 PPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPP 1606 >U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect protein 1, isoformb protein. Length = 1437 Score = 31.1 bits (67), Expect = 1.2 Identities = 17/47 (36%), Positives = 17/47 (36%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PP PP PP GG PPPP Sbjct: 707 PPITGGPPP-----PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748 Score = 30.7 bits (66), Expect = 1.6 Identities = 16/47 (34%), Positives = 16/47 (34%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PPP PP PP PPPP Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790 Score = 29.9 bits (64), Expect = 2.8 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 2/49 (4%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPX--PPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PPP PP PP GG PPPP Sbjct: 720 PPITGGPPPP----PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764 >U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect protein 1, isoforma protein. Length = 1435 Score = 31.1 bits (67), Expect = 1.2 Identities = 17/47 (36%), Positives = 17/47 (36%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PP PP PP GG PPPP Sbjct: 707 PPITGGPPP-----PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 748 Score = 30.7 bits (66), Expect = 1.6 Identities = 16/47 (34%), Positives = 16/47 (34%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PPP PP PP PPPP Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790 Score = 29.9 bits (64), Expect = 2.8 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 2/49 (4%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPX--PPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PPP PP PP GG PPPP Sbjct: 720 PPITGGPPPP----PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764 >AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. Length = 1018 Score = 31.1 bits (67), Expect = 1.2 Identities = 17/47 (36%), Positives = 17/47 (36%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PP PP PP GG PPPP Sbjct: 290 PPITGGPPP-----PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPP 331 Score = 30.7 bits (66), Expect = 1.6 Identities = 16/47 (34%), Positives = 16/47 (34%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PPP PP PP PPPP Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373 Score = 29.9 bits (64), Expect = 2.8 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 2/49 (4%) Frame = +2 Query: 797 PPXXGGGSPXXXXLPPPX--PPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 PP GG P PPP PP PP GG PPPP Sbjct: 303 PPITGGPPPP----PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347 >Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein ZK643.8 protein. Length = 774 Score = 30.7 bits (66), Expect = 1.6 Identities = 17/46 (36%), Positives = 17/46 (36%) Frame = -1 Query: 933 GGGCXXXEXAXXXPPPLXWGGSXXXXGGXGGGXFXXXGEPPPXXGG 796 GGGC PPP GG GG GG P P GG Sbjct: 39 GGGCGGG--GGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82 Score = 28.3 bits (60), Expect = 8.5 Identities = 17/47 (36%), Positives = 17/47 (36%) Frame = -1 Query: 936 GGGGCXXXEXAXXXPPPLXWGGSXXXXGGXGGGXFXXXGEPPPXXGG 796 GGGGC PPP GG GG GG G GG Sbjct: 62 GGGGCGGG--GGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGG 106 >Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein ZK643.8 protein. Length = 774 Score = 30.7 bits (66), Expect = 1.6 Identities = 17/46 (36%), Positives = 17/46 (36%) Frame = -1 Query: 933 GGGCXXXEXAXXXPPPLXWGGSXXXXGGXGGGXFXXXGEPPPXXGG 796 GGGC PPP GG GG GG P P GG Sbjct: 39 GGGCGGG--GGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGG 82 Score = 28.3 bits (60), Expect = 8.5 Identities = 17/47 (36%), Positives = 17/47 (36%) Frame = -1 Query: 936 GGGGCXXXEXAXXXPPPLXWGGSXXXXGGXGGGXFXXXGEPPPXXGG 796 GGGGC PPP GG GG GG G GG Sbjct: 62 GGGGCGGG--GGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGG 106 >U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology domain protein 1 protein. Length = 1346 Score = 30.7 bits (66), Expect = 1.6 Identities = 15/42 (35%), Positives = 17/42 (40%) Frame = +2 Query: 812 GGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 GG PPP PP PP+ +GG PPPP Sbjct: 762 GGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPP 803 >AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein. Length = 1346 Score = 30.7 bits (66), Expect = 1.6 Identities = 15/42 (35%), Positives = 17/42 (40%) Frame = +2 Query: 812 GGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937 GG PPP PP PP+ +GG PPPP Sbjct: 762 GGPVGVGVPPPPPPPSAIPLPPRLQGGIPPPPPLGIIPPPPP 803 >Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical protein T04F8.8 protein. Length = 165 Score = 29.1 bits (62), Expect = 4.9 Identities = 15/43 (34%), Positives = 16/43 (37%) Frame = -1 Query: 936 GGGGCXXXEXAXXXPPPLXWGGSXXXXGGXGGGXFXXXGEPPP 808 G GG PPP G + GG GGG G PP Sbjct: 56 GNGGGFGGNNYNNGPPPFDGGYNRPYGGGGGGGYGRPQGYVPP 98 >Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical protein Y41E3.2 protein. Length = 289 Score = 28.7 bits (61), Expect = 6.4 Identities = 27/102 (26%), Positives = 32/102 (31%), Gaps = 3/102 (2%) Frame = +1 Query: 229 GXPXKNPXGXPPPPPXXPLPRXVSXKXXMXXFPGKN-PXGXXGFLFFWRGXFXPQNFGKP 405 G P + P PPP P P+ PG N P G G P G P Sbjct: 120 GRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIPGDNGPPGEQGPKGPDAAPGEPGPKG-P 178 Query: 406 LGXFXXPPXXGGGGK--XPXXLGKXXXGXXGSKGEXPXNXPP 525 +G P G G+ P G G G+ PP Sbjct: 179 IGPPGPPGQAGAPGEPGSPAKSEPAVPGPPGPPGQAGQQGPP 220 >Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical protein C09H6.2b protein. Length = 954 Score = 28.7 bits (61), Expect = 6.4 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 259 PPPPPXXPLPRXVS 300 PPPPP P+PR VS Sbjct: 438 PPPPPSHPIPRRVS 451 >Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical protein C09H6.2a protein. Length = 982 Score = 28.7 bits (61), Expect = 6.4 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 259 PPPPPXXPLPRXVS 300 PPPPP P+PR VS Sbjct: 466 PPPPPSHPIPRRVS 479 >AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein protein. Length = 954 Score = 28.7 bits (61), Expect = 6.4 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 259 PPPPPXXPLPRXVS 300 PPPPP P+PR VS Sbjct: 438 PPPPPSHPIPRRVS 451 >AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical protein ZC123.1 protein. Length = 730 Score = 24.2 bits (50), Expect(2) = 7.0 Identities = 8/16 (50%), Positives = 8/16 (50%) Frame = +1 Query: 235 PXKNPXGXPPPPPXXP 282 P P PPPPP P Sbjct: 134 PPPTPAAPPPPPPPPP 149 Score = 22.6 bits (46), Expect(2) = 7.0 Identities = 7/10 (70%), Positives = 7/10 (70%) Frame = +1 Query: 259 PPPPPXXPLP 288 PPPPP P P Sbjct: 143 PPPPPPPPAP 152 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,197,637 Number of Sequences: 27780 Number of extensions: 286639 Number of successful extensions: 1886 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 704 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1504 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2454664212 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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