Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F16
         (948 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    31   1.5  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    30   2.0  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    29   3.4  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    29   3.4  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   3.4  
At5g11990.1 68418.m01402 proline-rich family protein contains pr...    29   4.5  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    29   4.5  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   4.5  
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    29   6.0  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    29   6.0  
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    28   7.9  
At4g16140.1 68417.m02445 proline-rich family protein contains pr...    28   7.9  
At1g15830.1 68414.m01900 expressed protein                             28   7.9  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
 Frame = +2

Query: 770 KRXXKXXFYPPXXGGG--SPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           KR  +    PP   GG  S       PP P      PP   GGG          PPPP
Sbjct: 646 KRPPRVPRPPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPP 703



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGG 895
           PP  GGG P      PP PP       +  GGG
Sbjct: 683 PPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGG 715


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           PP     SP     PPP PP +    P         + S + +PPPP
Sbjct: 487 PPPSSKMSPSVKAYPPPPPPPEYEPSPPPPSS--EMSPSVRAYPPPP 531


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 839 PPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPPXK 943
           PPP PP     PP  +  G     S    PP P +
Sbjct: 728 PPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPR 762


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 235 PXKNPXGXPPPPPXXPLP 288
           P  NP   PPPPP  P+P
Sbjct: 343 PIVNPPSLPPPPPSFPVP 360


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           PP     SP     PPP PP     PP           S    PPPP
Sbjct: 458 PPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPP 504


>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 839 PPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           PPP PP K   PP  +        +   HPPPP
Sbjct: 67  PPPPPPHKHSPPPLSQSLSPPPLITV-IHPPPP 98


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/58 (31%), Positives = 20/58 (34%)
 Frame = -3

Query: 508 GXPPWNPXGLPXFSXGXXXFFPPPXXXGVPKKXQXVXQNFGGQXTPSKKREXPXXRXG 335
           G PP N  G P    G     PPP   G P +     Q   G   P  +   P  R G
Sbjct: 334 GAPPPNYGGGPPPQYGAV---PPPQYGGAPPQNNNYQQQGSGMQQPQYQNNYPPNRDG 388


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           PP      P     PPP PP     PP         +     H PPP
Sbjct: 522 PPVYSPPPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPP 568


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = +2

Query: 794 YPPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPPP 937
           YPP  G   P     P   PP     PP    GG   A     +PP P
Sbjct: 37  YPPPPGAYPPAGYP-PGAYPPAPGGYPPAPGYGGYPPAPGYGGYPPAP 83


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPPXPPXKXXEPPQXRGGGXXXAXSXKXHPPP 934
           PP      P     PPP PP     PP           S    PPP
Sbjct: 519 PPAPVNSPPPPVYSPPPPPPPVHSPPPPVHSPPPPPVYSPPPPPPP 564


>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +2

Query: 767 PKRXXKXXFYPPXXGGGSPXXXXLPPPXPPXKXXEPP 877
           P+      F     G GSP     PPP PP     PP
Sbjct: 449 PRPTKPKNFNEENNGQGSPLIQITPPPPPPPPFRVPP 485


>At4g16140.1 68417.m02445 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 164

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
 Frame = +1

Query: 247 PXGXPPPPPXXPLPRXVSXKXXMXXFPGKNPXGXXGFLF---FWRGXFXPQNFGKPLGXF 417
           P   PPPPP  P P   S        P  +  G   + +      G + P       G +
Sbjct: 43  PNPSPPPPPSNPSPPPPSPTTTACPPPPSSSGGGPYYYYPPASQSGSYRPPPSSSSGGYY 102

Query: 418 XXPPXXGG 441
             PP  GG
Sbjct: 103 YPPPKSGG 110


>At1g15830.1 68414.m01900 expressed protein
          Length = 483

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPP-----XPPXKXXEPPQXRGGGXXXAXSXKXHPPP 934
           PP  GGG       PPP       P     PP  RGGG          PPP
Sbjct: 109 PPNRGGGETVIPGAPPPIRGGGGEPAIPGAPPPKRGGGGEPVIPGA--PPP 157



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
 Frame = +2

Query: 797 PPXXGGGSPXXXXLPPP-----XPPXKXXEPPQXRGGGXXXAXSXKXHPPP 934
           P   GGG P     PPP       P     PP  RGGG          PPP
Sbjct: 157 PKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGA--PPP 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,418
Number of Sequences: 28952
Number of extensions: 284780
Number of successful extensions: 2767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2187
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)