Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F15
         (854 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   5.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   5.4  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   5.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   5.4  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   5.4  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   5.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   5.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.1  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   7.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   7.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   7.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   7.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   7.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.4  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAERRVFXSRSHTXEPVA 470
           NS  T +SGL  P S  T PP +     +  +   P +
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPAS 171


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAERRVFXSRSHTXEPVA 470
           NS  T +SGL  P S  T PP +     +  +   P +
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAERRVFXSRSHTXEPVA 470
           NS  T +SGL  P S  T PP +     +  +   P +
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 217 SQVTSRGCRFEKCPLIGYPSSYSQ 146
           ++   + CR  KC L+G   S S+
Sbjct: 54  NRTACKACRLRKCLLVGMSKSGSR 77


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAERRVFXSRSHTXEPVA 470
           NS  T +SGL  P S  T PP +     +  +   P +
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAERRVFXSRSHTXEPVA 470
           NS  T +SGL  P S  T PP +     +  +   P +
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAERRVFXSRSHTXEPVA 470
           NS  T +SGL  P S  T PP +     +  +   P +
Sbjct: 90  NSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 127


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAERRVFXSRSHTXEPVA 470
           NS  T +SGL  P S  T PP +     +  +   P +
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAERRVFXSRSHTXEPVA 470
           NS  T +SGL  P S  T PP +     +  +   P +
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPAS 171


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 690 SNLKKCRVKVSIPWXKDYCLDL*CLEGIFWITN-HG 586
           +++KKCR +  +     +C      E + W  N HG
Sbjct: 569 NSMKKCRARYGLDQQNQWCKPCRPREQLTWRRNFHG 604


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 690 SNLKKCRVKVSIPWXKDYCLDL*CLEGIFWITN-HG 586
           +++KKCR +  +     +C      E + W  N HG
Sbjct: 461 NSMKKCRARYGLDQQNQWCKPCRPREQLTWRRNFHG 496


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 336 QAYGT--RVLGPAGDSTNYGGRLDW 404
           + +GT  RV  P    T YGGRL W
Sbjct: 75  KVHGTTVRVRPPKVYPTPYGGRLVW 99


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 336 QAYGT--RVLGPAGDSTNYGGRLDW 404
           + +GT  RV  P    T YGGRL W
Sbjct: 389 KVHGTTVRVRPPKVYPTPYGGRLVW 413


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 336 QAYGT--RVLGPAGDSTNYGGRLDW 404
           + +GT  RV  P    T YGGRL W
Sbjct: 622 KVHGTTVRVRPPKVYPTPYGGRLVW 646


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 336 QAYGT--RVLGPAGDSTNYGGRLDW 404
           + +GT  RV  P    T YGGRL W
Sbjct: 622 KVHGTTVRVRPPKVYPTPYGGRLVW 646


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 583 NSAWTPTSGLL*PNSXETIPPAE 515
           NS  T +SGL  P S  T PP +
Sbjct: 134 NSNATKSSGLTSPLSVSTSPPGK 156


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 351 RVLGPAGDSTNYGGRLDW 404
           R+  P    T YGGRL W
Sbjct: 657 RIRPPKKIPTPYGGRLVW 674


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 351 RVLGPAGDSTNYGGRLDW 404
           R+  P    T YGGRL W
Sbjct: 657 RIRPPKKIPTPYGGRLVW 674


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 351 RVLGPAGDSTNYGGRLDW 404
           R+  P    T YGGRL W
Sbjct: 657 RIRPPKKIPTPYGGRLVW 674


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 351 RVLGPAGDSTNYGGRLDW 404
           R+  P    T YGGRL W
Sbjct: 657 RIRPPKKIPTPYGGRLVW 674


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,956
Number of Sequences: 336
Number of extensions: 4207
Number of successful extensions: 26
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)